Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0921
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    30   0.39 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    29   0.91 
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    27   3.7  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   6.4  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 256 MLMFFLNVA*NIIVNGVSHYFKYFMFSLMQLIVTFFLYFVSHCVHLNLQNVLFKCLT 426
           +++FF  +A  + ++G  H   +F  S + L+ T +L+F       N+     K +T
Sbjct: 30  VVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFRDMSTEANIHGAHTKAVT 86


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 20/90 (22%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
 Frame = +3

Query: 465 LYWHISS--VTIVFTSFELSLLNPNNLNVFSIIYSYLLNNVIMYL*YYNNVIDVLRIVTT 638
           L+W  SS  + I+F   EL+ +N  +L++     S +L+  ++   +Y+N +  + +  T
Sbjct: 357 LWWFPSSSIIIILFDDMELAFVNSMSLDIIGT--STILDKSLLRWDWYSNSLAAIGVSQT 414

Query: 639 V--YVISEIEINFNY-FIERNKNLFINTYV 719
           V  ++ S + I+  Y F+  ++ + + +++
Sbjct: 415 VFPFISSSLCISPRYMFVVNSETVSVGSFL 444


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 522 LNPNNLNVFSIIYSYLLNNVI 584
           L+PNN+NV S I  Y +N ++
Sbjct: 102 LHPNNVNVNSEILEYYINEIV 122


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 286 NIIVNGVSHYFKYFM-FSLMQLI 351
           N+I NG+SH+F+  + F+L+ +I
Sbjct: 227 NLIYNGLSHFFQNILAFTLLSII 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,606
Number of Sequences: 5004
Number of extensions: 53556
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)