Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0921
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0045 + 314151-314323,314426-314488,314568-314684,314773-31...    29   3.8  
03_05_0092 - 20714102-20717902                                         29   5.1  

>05_01_0045 +
           314151-314323,314426-314488,314568-314684,314773-314887,
           315013-315171,315612-315716,315818-316081
          Length = 331

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 334 SLMQLIVTFFLYFVSHCVHLNLQNVLFKCLTST 432
           SLM LI  FF  F+ +   LNL NV  K  ++T
Sbjct: 65  SLMLLIKLFFCAFIGNTFSLNLYNVSMKFTSAT 97


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/24 (66%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 348  DCDVLLV--FCQSLRSLESSECFI 413
            DC  LLV  F  SLR LE SECFI
Sbjct: 1057 DCPKLLVDKFHTSLRKLEISECFI 1080


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,318,797
Number of Sequences: 37544
Number of extensions: 261409
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)