Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0921
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       32   0.42 
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   29   3.9  
SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1)                 29   5.2  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
 Frame = +3

Query: 480 SSVTIVFTSFELSLLNPNNLNVFSI-IYSYLLNNVIMYL*--YYNNVIDVLRIVTTVYVI 650
           SS +   +S  L+  +  N+N+  + I   ++NN+I+ +     NN ID++ I+  + ++
Sbjct: 236 SSSSSTSSSSSLTSSSFTNINIIIVNIIIIIINNIIIIIVNIIINNNIDIIIIIVNIIIV 295

Query: 651 S---EIEINFNYFIERNKNLFINTY 716
           +    I IN+NY    N  L ++ +
Sbjct: 296 NIIINIFINYNYIYSINIWLLVHPW 320


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 579 VIMYL*YYNNVIDVLRIVTTVYVISEIEINFNYFIERNKNLFINTYVKL 725
           +I+ +   +N+I ++ I+T + V+  + I  N  I +NKN    T V +
Sbjct: 116 IIIIIIVISNIIIIIIIITIIIVVVVVIIIINIIINKNKNNNNTTIVNI 164


>SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1)
          Length = 212

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
 Frame = +3

Query: 417 MFNINQNCS-LSLLKQMLYWHISSVTIVFTSFELSLLNPNNLNVFSIIYSYLLNNVIMYL 593
           + N+N   S +S L+  +  HIS+++ +  +  + + N + + V   ++   ++ + + +
Sbjct: 17  LVNVNVRISNISELRVNVNVHISNISELRVNVNVHISNISEIRVNVNVHISNISELRVNV 76

Query: 594 *YYNNVIDVLRIVTTVYV--ISEIEINFNYFIERNKNLFINTYVKL 725
            +  + I  LR+   V +  ISE+ +N N  I     L +N  V +
Sbjct: 77  NFRISNISELRVNVNVRISNISELRVNMNVHISNISELRVNVNVHI 122


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +3

Query: 540 NVFSIIYSYLLNNVIMYL*YYNNVIDVLRIVTTVYVISEIEINFNYFIERNKNLFINTYV 719
           N +  IY+Y L+    YL  YN  +DV      VY    +++ +NY+++   N +++ Y 
Sbjct: 554 NYYLDIYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNY-YLDV-YNYYLD-VYNYYLDVYN 610

Query: 720 KLK 728
           K K
Sbjct: 611 KDK 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,049,013
Number of Sequences: 59808
Number of extensions: 352749
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)