Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0921
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical...    30   2.0  
Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF067943-6|AAC17660.1|  328|Caenorhabditis elegans Serpentine re...    28   7.9  

>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical
           protein F21G4.6 protein.
          Length = 1885

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 286 NIIVNGVSHYFKYFMFSLMQLIVTFFLYF-VSHCVHLNLQNVLFKCLTSTKIV 441
           N+++  ++H FK    +++++IV   + F +S    L L NVL +CL   K++
Sbjct: 664 NLMLAAMAHDFKTSTENILEIIVYITVLFTLSPISALKLLNVLLRCLLDPKLI 716


>AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical
           protein Y62H9A.10 protein.
          Length = 396

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 322 YFMFSLMQLIVTFFLYFVSH 381
           YFMF L++ IVTFF++ + H
Sbjct: 265 YFMFILLKKIVTFFIHTIRH 284


>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = +3

Query: 438 CSLSLLKQMLYWHISSVT------IVFTSFELSLLNPNNLNVFSIIYSYLLNNVIMYL*Y 599
           C LS  + +L   I  +T      +++ +FE   LN +N+NV  ++ S    N+I+   Y
Sbjct: 314 CKLSYPESILVLTIGLITSILFSVVLYETFEKWYLNVSNVNVAILVVSLFTANLILI--Y 371

Query: 600 YNNVIDVLRI 629
            +N+ D  ++
Sbjct: 372 KDNIFDSTKL 381


>Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical
           protein R10H10.7 protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 540 NVFSIIYSYLLNNVIMYL*YYNNVIDVLRIVTTVYVISEIEINFNYFIERNKNLFINTYV 719
           N   II+ Y+ N  ++   + + V DV + +  + +  + E     F +RN NL +N Y 
Sbjct: 277 NGSDIIFEYMRN--LLSFGFNHRVFDVKKAMCQMIIKIQTECG-QLFGKRNYNLLMNQYF 333

Query: 720 KLKY 731
            L+Y
Sbjct: 334 YLRY 337


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -2

Query: 553 IEKTLRLLGFNRDNSNDVKTMVTDDMCQYNICFNKLKEQFWLMLNI*IKHSEDSSERND* 374
           +E  L+   +N     ++ + + + +C    CF KL+E    M    +KH +   E  D 
Sbjct: 164 VEIFLKSYIYNEQWPENLGSEMLEQLCTDFGCFKKLEEDVKHMYKQDLKHGDLIIEVVDG 223

Query: 373 QNTRRTSQS 347
           +NT   S+S
Sbjct: 224 KNTEENSES 232


>AF067943-6|AAC17660.1|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein41 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 731 IF*FNICINKQIFISFNKIIEINF 660
           +F +++CI   +FI+FN++  I+F
Sbjct: 102 LFCYDVCIFSHLFIAFNRLCAISF 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,948,789
Number of Sequences: 27780
Number of extensions: 293523
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)