Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0921
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    29   0.060
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    29   0.060
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    28   0.079
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.9  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   9.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 28.7 bits (61), Expect = 0.060
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 645 VISEIEINFNYFIERNKNLFINTYVKLKYS 734
           +IS +  N+NY     K L+ N Y KL Y+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYKKLYYN 110


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 28.7 bits (61), Expect = 0.060
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 645 VISEIEINFNYFIERNKNLFINTYVKLKYS 734
           +IS +  N+NY     K L+ N Y KL Y+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYKKLYYN 110


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 0.079
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 645 VISEIEINFNYFIERNKNLFINTYVKLKYS 734
           +IS +  N+NY     K L+ N Y KL Y+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYRKLYYN 110


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 469 YNICFNKLKEQFWLML-NI*IKHSEDSSE 386
           YNI  NK +E F LML N   K S   SE
Sbjct: 348 YNIMSNKFREAFKLMLPNCCGKWSSQKSE 376


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 600 YNNVIDVLRIVTTVYVISEIEINFNYFIERNKNLFIN 710
           +NN I  LR +  +Y +     ++N  +E N+N+  N
Sbjct: 384 WNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQN 420


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 645 VISEIEINFNYFIERNKNLFINTYVKLKY 731
           +IS +  N+NY    N N   N Y K  Y
Sbjct: 81  IISSLSNNYNYSNYNNYNNNYNNYNKKLY 109


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 96  NYIVSAFQTMRVRLRRCDRL 37
           N I S    +RVR+  CDRL
Sbjct: 104 NKIDSIINIIRVRVDACDRL 123


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 331 FSLMQLIVTFFLYFVSHCVHLNLQNVLFKC 420
           F+L  L   F  YF  +C+H  +     KC
Sbjct: 5   FTLQSLKKDFGTYFQQYCLHHKILIKKNKC 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,054
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)