BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0920 (719 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 250 1e-67 SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 31 0.22 SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 29 0.67 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.2 SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 27 2.0 SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 3.6 SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 4.7 SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 26 6.2 SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 6.2 SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 6.2 SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 6.2 >SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 250 bits (613), Expect = 1e-67 Identities = 111/137 (81%), Positives = 128/137 (93%) Frame = +1 Query: 307 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 486 LNKTKPIWTRN ++T++EY FYKSLTNDWEDHLAVKHFSVEGQLEFRA+LFVPRRAP Sbjct: 265 LNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRAILFVPRRAPM 324 Query: 487 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKIL 666 DLFE K++KNNIKLYVRRVFI D+CE+LIPE+L FI+GVVDSEDLPLN+SREMLQQNKI+ Sbjct: 325 DLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLPLNLSREMLQQNKIM 384 Query: 667 KVIRKNLVKKCLELFEE 717 KVIRKNLV++CL++F E Sbjct: 385 KVIRKNLVRRCLDMFNE 401 Score = 42.3 bits (95), Expect = 7e-05 Identities = 19/26 (73%), Positives = 22/26 (84%) Frame = +1 Query: 100 AEVETFAFQAEIAQLMSLIINTFYSN 177 + ETF F+AEI+QLMSLIINT YSN Sbjct: 2 SNTETFKFEAEISQLMSLIINTVYSN 27 >SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces pombe|chr 1|||Manual Length = 1679 Score = 30.7 bits (66), Expect = 0.22 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 2/125 (1%) Frame = +1 Query: 334 RNADDITQDEYGDFYKSLTN-DWEDHLAVKHFSVEG-QLEFRALLFVPRRAPFDLFENKK 507 R AD+ T+D ++L++ + +A+ F +E F + + +A L ++K Sbjct: 212 RLADEFTRDSGLPDLENLSHVNVLLDIALDKFRIEALHANFSVSISLRNKAIQHLLKSKI 271 Query: 508 RKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNL 687 N K FI++ + P + F R VVD D + + KIL ++ N+ Sbjct: 272 AANTDKAINCIEFILEAPPSMQPRLIQFTRWVVDKADPNFLKPKAAMILEKILSILSSNI 331 Query: 688 VKKCL 702 ++ L Sbjct: 332 IQSDL 336 >SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 745 Score = 29.1 bits (62), Expect = 0.67 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 419 NTSPLKVS*SSEHYFLCHVVHLLTCLKTRS--ARTISSCMYEEFSSWTTVRISSQSTLTS 592 NTSPLK + S+ F+ V L LKT++ R+I + S TT + S + + Sbjct: 514 NTSPLKYTHSASKSFIGEVQDSLQALKTKAHKPRSIGGDSSQTTLSETTKKYGSVAKKSF 573 Query: 593 LEVLSTVRTFL 625 + +S ++F+ Sbjct: 574 FQGVSDAKSFV 584 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 28.3 bits (60), Expect = 1.2 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +2 Query: 320 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SS 451 SLS P T T+P ST +++ P+P + +N+SPL + +S Sbjct: 186 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 228 Score = 28.3 bits (60), Expect = 1.2 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +2 Query: 320 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SS 451 SLS P T T+P ST +++ P+P + +N+SPL + +S Sbjct: 242 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2 Query: 320 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SS 451 SLS P T T+P ST +++ P+P + +N++PL + +S Sbjct: 129 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTS 171 >SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 27.5 bits (58), Expect = 2.0 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 334 RNAD-DITQDEYGDFYKSLTNDWEDHLA 414 +NAD IT+D + D YK LT + +D A Sbjct: 60 QNADLSITKDNFRDVYKKLTENEDDSFA 87 >SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1935 Score = 26.6 bits (56), Expect = 3.6 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +1 Query: 394 DWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLI 573 D LAVK + G L L + DL N+K +K ++ ++ +++ DL+ Sbjct: 939 DLPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLL 998 Query: 574 PEYLNFIRGVVD 609 P N +R V++ Sbjct: 999 PLTKNVLRLVLN 1010 >SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 291 Score = 26.2 bits (55), Expect = 4.7 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 542 FSSWTTVRISSQSTLTSLEVLSTVRTFL 625 F+++ +++ S QS L E LSTV TFL Sbjct: 181 FTAYNSIKQSLQSRLPPDEKLSTVTTFL 208 >SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 124 Score = 25.8 bits (54), Expect = 6.2 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +1 Query: 604 VDSEDLPLNISREMLQQNKILKVIRKNLVKK 696 ++SED+PL+ R+ML++ + RK L+K+ Sbjct: 87 INSEDMPLSDDRDMLKERHVKS--RKLLLKE 115 >SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 25.8 bits (54), Expect = 6.2 Identities = 15/76 (19%), Positives = 33/76 (43%) Frame = +1 Query: 490 LFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILK 669 ++E KN + ++ F D + +Y N+I + + +LP +L Q I Sbjct: 108 IYEQISEKNRLFYLIKTKFKDDMISGTLEDYDNYIEVLKEKLELPSCFQAILLVQKHIRF 167 Query: 670 VIRKNLVKKCLELFEE 717 ++ + + L ++ E Sbjct: 168 LLTQMVATSSLHVWSE 183 >SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1233 Score = 25.8 bits (54), Expect = 6.2 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Frame = +1 Query: 490 LFENKKRKNNIK-----LYVRRVFIMDNCEDLIPEYLNFIR 597 L EN KNN+ L ++ I++ CE +I + LNF++ Sbjct: 1144 LQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLK 1184 >SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces pombe|chr 2|||Manual Length = 2493 Score = 25.8 bits (54), Expect = 6.2 Identities = 13/52 (25%), Positives = 28/52 (53%) Frame = +1 Query: 556 NCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELF 711 +C ++ E + + D+E+ N+ R++L ++ KNLV+ ++LF Sbjct: 2122 HCREMSAELIKLVYQRADNENF--NLIRQLLSHWTSVEKAGKNLVRVSMQLF 2171 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,392,875 Number of Sequences: 5004 Number of extensions: 44076 Number of successful extensions: 139 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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