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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0920
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   250   1e-67
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    31   0.22 
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.67 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   2.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   3.6  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    26   4.7  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    26   6.2  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   6.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.2  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  250 bits (613), Expect = 1e-67
 Identities = 111/137 (81%), Positives = 128/137 (93%)
 Frame = +1

Query: 307 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 486
           LNKTKPIWTRN  ++T++EY  FYKSLTNDWEDHLAVKHFSVEGQLEFRA+LFVPRRAP 
Sbjct: 265 LNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRAILFVPRRAPM 324

Query: 487 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKIL 666
           DLFE K++KNNIKLYVRRVFI D+CE+LIPE+L FI+GVVDSEDLPLN+SREMLQQNKI+
Sbjct: 325 DLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLPLNLSREMLQQNKIM 384

Query: 667 KVIRKNLVKKCLELFEE 717
           KVIRKNLV++CL++F E
Sbjct: 385 KVIRKNLVRRCLDMFNE 401



 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 100 AEVETFAFQAEIAQLMSLIINTFYSN 177
           +  ETF F+AEI+QLMSLIINT YSN
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSN 27


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
 Frame = +1

Query: 334 RNADDITQDEYGDFYKSLTN-DWEDHLAVKHFSVEG-QLEFRALLFVPRRAPFDLFENKK 507
           R AD+ T+D      ++L++ +    +A+  F +E     F   + +  +A   L ++K 
Sbjct: 212 RLADEFTRDSGLPDLENLSHVNVLLDIALDKFRIEALHANFSVSISLRNKAIQHLLKSKI 271

Query: 508 RKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNL 687
             N  K      FI++    + P  + F R VVD  D      +  +   KIL ++  N+
Sbjct: 272 AANTDKAINCIEFILEAPPSMQPRLIQFTRWVVDKADPNFLKPKAAMILEKILSILSSNI 331

Query: 688 VKKCL 702
           ++  L
Sbjct: 332 IQSDL 336


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 419 NTSPLKVS*SSEHYFLCHVVHLLTCLKTRS--ARTISSCMYEEFSSWTTVRISSQSTLTS 592
           NTSPLK + S+   F+  V   L  LKT++   R+I     +   S TT +  S +  + 
Sbjct: 514 NTSPLKYTHSASKSFIGEVQDSLQALKTKAHKPRSIGGDSSQTTLSETTKKYGSVAKKSF 573

Query: 593 LEVLSTVRTFL 625
            + +S  ++F+
Sbjct: 574 FQGVSDAKSFV 584


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 320 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SS 451
           SLS P T  T+P  ST +++ P+P    +   +N+SPL  + +S
Sbjct: 186 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 228



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 320 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SS 451
           SLS P T  T+P  ST +++ P+P    +   +N+SPL  + +S
Sbjct: 242 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 320 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SS 451
           SLS P T  T+P  ST +++ P+P    +   +N++PL  + +S
Sbjct: 129 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTS 171


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 334 RNAD-DITQDEYGDFYKSLTNDWEDHLA 414
           +NAD  IT+D + D YK LT + +D  A
Sbjct: 60  QNADLSITKDNFRDVYKKLTENEDDSFA 87


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +1

Query: 394  DWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLI 573
            D    LAVK  +  G L    L  +      DL  N+K    +K ++ ++ +++   DL+
Sbjct: 939  DLPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLL 998

Query: 574  PEYLNFIRGVVD 609
            P   N +R V++
Sbjct: 999  PLTKNVLRLVLN 1010


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 542 FSSWTTVRISSQSTLTSLEVLSTVRTFL 625
           F+++ +++ S QS L   E LSTV TFL
Sbjct: 181 FTAYNSIKQSLQSRLPPDEKLSTVTTFL 208


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 604 VDSEDLPLNISREMLQQNKILKVIRKNLVKK 696
           ++SED+PL+  R+ML++  +    RK L+K+
Sbjct: 87  INSEDMPLSDDRDMLKERHVKS--RKLLLKE 115


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/76 (19%), Positives = 33/76 (43%)
 Frame = +1

Query: 490 LFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILK 669
           ++E    KN +   ++  F  D     + +Y N+I  + +  +LP      +L Q  I  
Sbjct: 108 IYEQISEKNRLFYLIKTKFKDDMISGTLEDYDNYIEVLKEKLELPSCFQAILLVQKHIRF 167

Query: 670 VIRKNLVKKCLELFEE 717
           ++ + +    L ++ E
Sbjct: 168 LLTQMVATSSLHVWSE 183


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +1

Query: 490  LFENKKRKNNIK-----LYVRRVFIMDNCEDLIPEYLNFIR 597
            L EN   KNN+      L  ++  I++ CE +I + LNF++
Sbjct: 1144 LQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLK 1184


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 556  NCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELF 711
            +C ++  E +  +    D+E+   N+ R++L     ++   KNLV+  ++LF
Sbjct: 2122 HCREMSAELIKLVYQRADNENF--NLIRQLLSHWTSVEKAGKNLVRVSMQLF 2171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,875
Number of Sequences: 5004
Number of extensions: 44076
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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