Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0920
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 269 2e-72
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 173 2e-43
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 87 2e-17
SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53) 29 2.9
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 8.8
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2) 28 8.8
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 8.8
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 8.8
SB_3632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 269 bits (659), Expect = 2e-72
Identities = 122/137 (89%), Positives = 133/137 (97%)
Frame = +1
Query: 307 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 486
LNKTKPIW RNAD+IT +EYG+FYKSLTNDWE+HLAVKHFSVEGQLEFRALLFVP+RAPF
Sbjct: 221 LNKTKPIWMRNADEITTEEYGEFYKSLTNDWEEHLAVKHFSVEGQLEFRALLFVPKRAPF 280
Query: 487 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKIL 666
DLFE++K++NNIKLYVRRVFIMDNCEDLIPEYL FI+GVVDSEDLPLNISREMLQQNKIL
Sbjct: 281 DLFESRKKRNNIKLYVRRVFIMDNCEDLIPEYLGFIKGVVDSEDLPLNISREMLQQNKIL 340
Query: 667 KVIRKNLVKKCLELFEE 717
KVIRKNLVKKC+ELF E
Sbjct: 341 KVIRKNLVKKCMELFNE 357
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 173 bits (420), Expect = 2e-43
Identities = 80/138 (57%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Frame = +1
Query: 307 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 486
LN KPIWTR +I DEY +FYKS T + ED LA HF EG++ FR++LFVP+ AP
Sbjct: 321 LNTNKPIWTRKPKEIKDDEYNEFYKSFTKESEDPLAKIHFVAEGEVTFRSILFVPKAAPS 380
Query: 487 DLFENK-KRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKI 663
+LF + K+ + IKL+VRRVFI DN E+++P+YL+FIRGVVDS+DLPLN+SRE LQQ+K+
Sbjct: 381 NLFSDYGKKMDAIKLFVRRVFITDNFEEMMPKYLSFIRGVVDSDDLPLNVSREQLQQHKL 440
Query: 664 LKVIRKNLVKKCLELFEE 717
LKVI+K LV+K L++ ++
Sbjct: 441 LKVIKKKLVRKALDMIKK 458
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 82 EMETQPAEVETFAFQAEIAQLMSLIINTFYSN 177
+M+ + E FQAE+ ++M LIIN+ Y N
Sbjct: 68 QMKELRDKAEKHEFQAEVNRMMKLIINSLYRN 99
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 86.6 bits (205), Expect = 2e-17
Identities = 37/110 (33%), Positives = 65/110 (59%)
Frame = +1
Query: 307 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 486
+N +P+WT DI+++++ +FY+ L+ ++ H+ + L R++ + P P
Sbjct: 270 INTIQPLWTLEPRDISKEQHDEFYQFLSKGYDKPRYYLHYKTDAPLNIRSIFYFPETLP- 328
Query: 487 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNIS 636
+F ++ ++ I LY RRV I E ++P+ FIR VVDSED+PLN+S
Sbjct: 329 QMFNMQQMESGISLYSRRVLIQAKAEKMLPQRFRFIRSVVDSEDIPLNLS 378
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/50 (46%), Positives = 37/50 (74%)
Frame = +1
Query: 568 LIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFEE 717
++P +L FIRGVVDSED+PLN+SRE+LQ + ++K + L + ++ +E
Sbjct: 399 VLPRWLRFIRGVVDSEDIPLNLSRELLQDSALIKKLSNVLSARLVKFLQE 448
>SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)
Length = 319
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 334 RNADDITQDEYGDFYKSLTNDWEDHLAVK----HFSVEGQL 444
RN DD T +GD+ K ND HL K H+ VEG +
Sbjct: 279 RNTDDDTDVWFGDWEKGQINDILSHLGNKVKSSHYIVEGTI 319
>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 289
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 123 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 1
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 123 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 1
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 123 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 1
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 517
>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
Length = 306
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 123 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 1
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 511 KNNIKLYVRRVFIMDNCEDLIPEYLNFIR-GVVDSEDLPLNISREMLQ 651
+N ++Y + M+N DL+ + + V D +DLP N S+++ +
Sbjct: 199 ENGPRVYTLNISAMNNHTDLMLQSFGVVTINVTDVDDLPANFSQKLYE 246
>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 412
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 123 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 1
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 246
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 123 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 1
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_3632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 377 TNPLPMIGRTILQSNTSPLKVS*SSEH-YFLCHVV--HLLTCLKTRSARTISSCMYEEFS 547
TN +GR + S + S+ H +FL ++ ++ L R+ R +++C+Y S
Sbjct: 53 TNLSRRVGRRVTFRVLSTTDYALSTIHRFFLIKLIVSGYISLLIGRNRRVLAACVYTNLS 112
Query: 548 SWTTVRISSQSTLTSLEVLSTVRTFL 625
R++ + T+ LST+ FL
Sbjct: 113 RRVGRRVTFRVLSTTDYALSTIHRFL 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,766
Number of Sequences: 59808
Number of extensions: 329860
Number of successful extensions: 893
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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