Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0920
         (719 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   5.4  
AJ010904-1|CAA09390.1|  142|Anopheles gambiae nitric oxide synth...    23   7.2  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
            gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 93   CLHFFRHFLYCFLFNSHKMTRGFLTHVFQS 4
            C   F HF Y F F+S      F   +F S
Sbjct: 945  CFRLFNHFYYLFDFDS--SLNSFRNRIFSS 972


>AJ010904-1|CAA09390.1|  142|Anopheles gambiae nitric oxide synthase
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 397 WEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIP 576
           W++   +K   V+ ++    L F  R    DL+ ++K +   K  + RVF+  + E+ IP
Sbjct: 7   WQEWDHIKSEMVDCKIPKVWLFFGCRTKNVDLYRDEKEEMVQKGVLDRVFLALSREENIP 66

Query: 577 E 579
           +
Sbjct: 67  K 67


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,607
Number of Sequences: 2352
Number of extensions: 10415
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)