Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0917
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.27
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 1.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 27 3.4
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 5.9
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 7.8
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.8
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 7.8
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 129 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 242
TLP +T +T R + PPS SNR + + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 161 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 298
N+ S+ + Q + + IY PD Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 169 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 41
LFV+ VEY PG L LR GS +T+ +FL CG+++C
Sbjct: 83 LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 159 RTKRPHSDPPSLTASNRVSRTWTPASVS 242
R RP +PP L+ASN T P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 660 PVGQKR-QALAACRKRSPSLNRKWSSMSCCWVSFDMPVRG 544
P G+KR A+AA + R+P L + + +FD V+G
Sbjct: 43 PPGEKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKG 82
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 293 IIEDYHNGFKKTDKHPPKNW 352
I++ ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -3
Query: 174 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 22
E + F RL T +F S + E L AS S+VAA I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +1
Query: 424 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPH 552
P+ VP P P VPV + GQ L PV P LPPH
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP-------PLPPH 705
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 520 GRAQGHVLPPHRHVEGDPAAAHRRPLPVQGG 612
GR Q VLP DPAA +PLP + G
Sbjct: 513 GRCQSMVLPIMNKWTVDPAAKDVKPLPRKVG 543
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 374 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 496
N+D A EF++ T S++G N C+ + YK DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 144 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 28
+SLV++ ++ +LKP + F V A VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,780
Number of Sequences: 5004
Number of extensions: 52025
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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