Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0917
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0040 + 11816056-11819069,11819837-11820428 33 0.21
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.21
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 32 0.49
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 30 2.0
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 30 2.0
11_06_0142 - 20564572-20565951 29 2.6
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 29 2.6
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 29 2.6
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 2.6
03_05_0447 - 24421442-24422767 29 2.6
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 3.5
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 6.0
07_03_1160 - 24430240-24431268 28 6.0
05_07_0219 - 28474661-28475146,28475979-28476644 28 6.0
04_04_0437 + 25193263-25194627 28 6.0
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 6.0
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 28 6.0
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 28 8.0
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 28 8.0
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 28 8.0
02_03_0175 + 15999507-15999839,16000126-16000407,16000736-16000831 28 8.0
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 8.0
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 28 8.0
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 28 8.0
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 451 PLPHRVPVQGD-GGQGLRHPVQPRGRAQGHVLPPHRHV--EGDPAAAHRRPLP 600
P P PV GD G +G+ V +G A+G + P R V G P AA P P
Sbjct: 49 PPPPTAPVAGDDGSKGVEGVVANQGGAEGVAVSPDRSVPLSGGPTAASSLPPP 101
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 182 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 322
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 31.9 bits (69), Expect = 0.49
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -3
Query: 573 WVSFDMP----VRG*NVPLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRV 406
W SFD P V G ++ + + P + +Y ++ G+ GY S PQ
Sbjct: 170 WQSFDHPTDALVPGQSLLQGMILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYN 229
Query: 405 ETTNSPAGSRLPSVSTSPQFLGGCLSVFLK 316
++ R+P+ T F GC S+F++
Sbjct: 230 YVVSTNKSKRVPTTVT---FTNGCFSIFVQ 256
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = +1
Query: 481 DGGQGLRHPVQPRGR------AQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLP 624
DGG+ R PVQ G A V PPH P H +P P +G P
Sbjct: 67 DGGRTDRDPVQLAGLFAPVFGAAAGVQPPHLRAPPPPQVFHAQPKPGEGAMAAP 120
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 171 PHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPC 272
P PP A+ R SRT TPA+ S+ P+ PC
Sbjct: 340 PAPPPPPPPAAKRTSRTSTPATTSS-SAPASGPC 372
>11_06_0142 - 20564572-20565951
Length = 459
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 186 PSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCL 287
P L S V R+W A + RR R+P P CL
Sbjct: 31 PDLVHSGAVCRSWHSAFATFRRLGLRSPPHPPCL 64
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 23 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 199
S K + + + +++ + G F K D S + K+ TRE+ D+ K + +LDC
Sbjct: 94 SVWKGGMIKEYSKMDECKTGDFGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDC 153
Query: 200 I 202
+
Sbjct: 154 V 154
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = +1
Query: 424 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPV 603
P A G+P P + Q Q + P + RG G P H+ P A P P
Sbjct: 28 PPANGLPSTPPRQQAQAQA---QQVGTP-RRRGSKSGSTTPGHQ----TPGVAWPSPYPS 79
Query: 604 QGGRPLPAG 630
G PLPAG
Sbjct: 80 GGASPLPAG 88
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 451 PLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPVQ 606
P P P G+RHPV R + HV PP P+++ R+ P Q
Sbjct: 48 PAPAPAPAPETHRPGIRHPVPRHHRKRPHVAPP----LPPPSSSERQVAPYQ 95
>03_05_0447 - 24421442-24422767
Length = 441
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 DGCSSARKAATMVDAATLEKLEAGFSKLQG-SDSK 112
DGC S+ ++ AA L +LEAG K G SD++
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTGDSDAR 97
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 183 DPNEVFLFFRLSNTSLVRYFFSSDLE-SDPWSLLKPASNFSRVAASTIVAAFLA 25
D +++ L + LV YF+ SD SLL SNF+R+A+ + ++ F++
Sbjct: 139 DASKLALKHTRAGAPLVAYFWDKTFAWSDASSLLPFCSNFTRLASQSTMSGFVS 192
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 424 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 516
P+ RG Q PH++ + D G G+++P P
Sbjct: 322 PMQRGAGAQSHPHQLRRKADQGMGMQNPGYP 352
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +1
Query: 442 PLQPLPHRVPVQGDGGQGLRHPVQ-PRGRAQGHV---LPPHRHVEG-----DPAAAHRRP 594
P+QP P + P G L +P Q P+ G +PP +G +P+ + P
Sbjct: 101 PVQPCPDQPPQPKPDGPPLPNPNQPPQPNPNGPPKPDMPPMPKPDGLPNTYEPSRPDQPP 160
Query: 595 LPVQGGRPLP 624
P+ G PLP
Sbjct: 161 QPISDGPPLP 170
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 171 PHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCL 287
PH PPS S+ + T T + T TP+ P S + L
Sbjct: 86 PHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLL 124
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 161 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 286
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 429 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 322
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 466 VPVQGDGGQGLRHPVQPRGRAQGHVL---PPHRHVEGDPAAAHRRP 594
+P Q QGLR + G H+ PP++ +E D AAA R P
Sbjct: 279 IPSQYKATQGLRPLEKHAGHVASHLRILPPPNKVLENDNAAASRPP 324
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 23 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 199
S K + + + +++ + G F K D S + K+ TRE D+ K + +LDC
Sbjct: 326 SVWKGGMIKEYSKIDECKTGDFGKRPLIDDISTVCKWFTREHSDTTYGKNAQLAAKVLDC 385
Query: 200 I 202
+
Sbjct: 386 V 386
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/101 (26%), Positives = 43/101 (42%)
Frame = -3
Query: 489 SSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVFLKPL 310
+++++Y+ + G K SS R R ++ G RL ST P LG S F P
Sbjct: 509 NAVNMYYSPLGPGFKQIESSP-DVRLRPRFSHD-RGIRLSPGSTGPMSLGASPSQFTPPN 566
Query: 309 W*SSMIGSNSSANTEYDSASGA*IPTPESKFSTPDWMQSRR 187
+ + +++ + ASG +P K TP RR
Sbjct: 567 YQMQIPSNSTGMHGSGSPASGGIHGSPLGK--TPSSYSKRR 605
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 505 PVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLP 600
P+ PR P +RH +G H+ PLP
Sbjct: 339 PLHPRSGGMAPESPTNRHDDGKKKQTHKLPLP 370
>02_03_0175 + 15999507-15999839,16000126-16000407,16000736-16000831
Length = 236
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 484 GGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLPAG 630
GG G VQ R + + HRH +PA + V GRP AG
Sbjct: 139 GGNGSGGAVQDNDRVERQAVAGHRHRHDNPACGSQ---VVGDGRPSAAG 184
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 237 PTPESKFSTPDWMQS 193
P PE+K TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131
>02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = -2
Query: 436 LERAAAAHAGGDHELAGGVEVAERVHVSPVLGRVLVGLLEAIVVVLDDRVKQLGEHGVRL 257
LER A GD ++ V + ++ + R G+ V + V+ G HG +
Sbjct: 830 LERRRAELDAGDQKIRELVSILDQ-RKDESIERTFKGVARHFREVFSELVQ--GGHGHLV 886
Query: 256 GVRRVDTDAGVQVLDTRLDAVKEGGSE 176
+++ D DAG + +D D +E SE
Sbjct: 887 MMKKKDGDAGDEDIDNDEDGPREPDSE 913
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +3
Query: 123 RSTLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPS 281
RS G Y+ R H D P + + +R R S++PC PS
Sbjct: 224 RSQSKGYYNERPLDGRSHDDMPKFSKESPQARASANYGAKGRPAQSKSPCQPS 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,453
Number of Sequences: 37544
Number of extensions: 422081
Number of successful extensions: 1962
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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