Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0917
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    28   0.24 
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            27   0.55 
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    26   1.3  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    25   1.7  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   3.0  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    24   3.9  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.2  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   5.2  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   9.0  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   9.0  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   9.0  
AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A...    23   9.0  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +1

Query: 448 QPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPL 597
           QP P   P      Q  +HP    GR+   + PP  H +    AAH   L
Sbjct: 829 QPPPGSHPGAQTQPQLSQHPPGASGRSSAVITPPSTHHQAAAVAAHHHHL 878


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 27.1 bits (57), Expect = 0.55
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 242  YAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVVSTRV 415
            + P+   Y+  A L+DP I  ++    K     P  +     +  +DP GEF  +  V
Sbjct: 2685 WEPETGLYNYRARLYDPDIGRFYQMDPKEQYPSPYVYAGNSPVSLIDPDGEFAFTLAV 2742


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  KCQKSRNNGRRRNPREIGGW 81
           K   SR N RRR+PR  G W
Sbjct: 249 KIPPSRRNPRRRSPRSGGRW 268


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 467 SQYKEMEDKVSGTLSSLEGELKGTFYPLTGMSKETQQQLIDDHFLFKEGDRF 622
           +++  ++D++S +L SLE +   T         E  Q + +  F  +  D F
Sbjct: 684 TRFSNLQDQLSNSLMSLECDALATKLKPNNYEYERNQNIYNSQFKVEYSDNF 735


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 444 GYPSSERPQRTRVETTNSPAGSR 376
           G  S + PQR+  + T+SP GS+
Sbjct: 300 GSDSEDLPQRSAEDRTHSPVGSQ 322


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
            protein.
          Length = 1077

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 12   TVVQVPEKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTL 134
            T+ +V  +P+  S   PS NWRL+  +     LS   RSTL
Sbjct: 921  TMTEVLLEPKV-SLENPSVNWRLLWRNIHRSCLSSLQRSTL 960


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 242  YAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGE 394
            + P+   Y+  A L+DP I  ++    K     P  +     +  +DP GE
Sbjct: 2675 WEPETGLYNYRARLYDPDIGRFYQMDPKEQYPSPYVYAGNSPVSLIDPDGE 2725


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +1

Query: 505 PVQPRGRAQGHVLPPHRHVEGDPAAAH----RRPLPVQGGRP 618
           P  P G  +  + P + ++ G   +      R P+P+QGG P
Sbjct: 268 PPNPMGGPRPQISPQNSNLSGGMPSGMVGPPRPPMPMQGGAP 309


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +1

Query: 439 VPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDP 573
           VP+ PL  +    G  G     P         H LP H H +  P
Sbjct: 69  VPISPLHIKQEPLGSDGPMPAQPPHHHQHPHHHQLPHHPHHQHHP 113


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +1

Query: 439 VPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDP 573
           VP+ PL  +    G  G     P         H LP H H +  P
Sbjct: 69  VPISPLHIKQEPLGSDGPMPAQPPHHHQHPHHHQLPHHPHHQHHP 113


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = -3

Query: 273 NTEYDSASGA*IPTPESKFSTPDWMQSRRVDPNEV 169
           NT+Y++ +   + +P+    T   +Q +++ PN++
Sbjct: 187 NTQYNALNDNYVTSPQPSQVTSRQLQQQQLQPNQL 221


>AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A2
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 302 DYHNGFKKTDKHPPKNWG 355
           D HN   K  ++PPK++G
Sbjct: 448 DLHNQSVKAMRYPPKSYG 465


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,892
Number of Sequences: 2352
Number of extensions: 12938
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)