Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0917
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    31   0.54 
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    31   0.54 
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.7  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   3.8  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   3.8  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   5.0  
At1g24706.1 68414.m03104 expressed protein                             28   5.0  
At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria...    28   6.7  
At4g36910.1 68417.m05232 CBS domain-containing protein contains ...    28   6.7  
At1g13310.1 68414.m01545 expressed protein                             28   6.7  
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    27   8.8  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +3

Query: 30  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 209
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+ + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88

Query: 210 VSRTWT---PASVSTRRTPSRTP 269
             R  +   PAS S R +  R P
Sbjct: 89  PIRDLSIDLPAS-SRRLSTGRLP 110


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +3

Query: 30  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 209
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+ + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88

Query: 210 VSRTWT---PASVSTRRTPSRTP 269
             R  +   PAS S R +  R P
Sbjct: 89  PIRDLSIDLPAS-SRRLSTGRLP 110


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 308 HNGFKKTDKHPPKNWGDVDTLGNLDPA 388
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 338 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 490
           PP  +G  D++TL   + AG++V  + +  G+  EG+ F P    + Y   E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 528  SSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAG 382
            S  +RLD         S + D  R   KGY   +R  R RV+ ++ P G
Sbjct: 1461 SVEARLDLNKTVTDDQSTHRDQDRSKDKGYERQDRDHRERVDRSDKPRG 1509


>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
           identical to SP|Q96252 ATP synthase delta' chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile PF02823: ATP synthase,
           Delta/Epsilon chain, beta-sandwich domain
          Length = 203

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 126 STLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRT 254
           STL   +  A +   P+ DPP   ++    R  TP+S+ T+ T
Sbjct: 32  STLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLT 74


>At4g36910.1 68417.m05232 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 236

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 540 NVPLS-SPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSV 364
           +VPLS +P R    P +   +   + SV+   K   S   P ++R+ + +S AGS L + 
Sbjct: 7   SVPLSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTN 66

Query: 363 STSPQ 349
           S+SP+
Sbjct: 67  SSSPR 71


>At1g13310.1 68414.m01545 expressed protein
          Length = 111

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 657 VGQKRQALAACRKRSPSLNRKW 592
           VG  R+ALAA +K +PS + KW
Sbjct: 27  VGVLRRALAAAKKSTPSKDDKW 48


>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = -3

Query: 654 GQKRQALAACRKRSPSLNRKWSSMSCCWVSFDMPVRG*NV-PLSSPSRLDRVPETLSSIS 478
           G +  A AA     P LN+  + M        +  +G +  PL  P+    +   +   S
Sbjct: 525 GHRFTAAAASNSSRPPLNQATNHMIHSTFDEKIMQKGNHADPLLLPAPAASLLRDVRRTS 584

Query: 477 LYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLG 340
           + WD         P++    RTR  + N P  S     + +P+ +G
Sbjct: 585 VVWDQEAGRYISVPATTSEPRTRFSSQNQPIPSSHMGNTQNPRPVG 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,893
Number of Sequences: 28952
Number of extensions: 295456
Number of successful extensions: 1199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)