Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0916
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 48 6e-07
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 48 8e-07
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 47 1e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 1e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 3e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 41 1e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 3e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 39 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 4e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 7e-04
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 7e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.001
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.004
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.004
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.005
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.005
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.006
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.006
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 34 0.011
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.026
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.026
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.034
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.034
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.14
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.14
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.14
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.32
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.32
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 0.73
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 27 0.97
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 2.2
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.2
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 3.0
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 3.9
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 5.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.8
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 6.8
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 24 9.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 24 9.0
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 48.0 bits (109), Expect = 6e-07
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAED 272
D K+Y+ NL N + ++ ++ +G++ + + +N GF F EF++P DAE
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 273 SVRGLDGTRCCGTRIRVEMS 332
++ GLDG G ++ + +
Sbjct: 367 AISGLDGKDTYGNKLHAQFA 386
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 72 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA 215
S+KT+ S Y + K+ ++GT S K+F +Y +IR+ VA
Sbjct: 443 SVKTQFSNYGPL-IDIKI-PRSIGTRNSGLGTGKVFVRYSDIRSAEVA 488
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 47.6 bits (108), Expect = 8e-07
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+++VG + A++ ++ F YG I + + GF FVE ED RDA D V G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQGKE 61
Query: 300 CCGTRIRVEMSNG 338
G+RI VE + G
Sbjct: 62 FMGSRIVVEPARG 74
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 47.2 bits (107), Expect = 1e-06
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSVRGL 287
VYVGNL ++ +I +FSK G IR + + + P GF FVE+ + +DA DS++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 288 DGTRCCGTRIRVEMSNG 338
T IR ++ +G
Sbjct: 94 SRTSLDERIIRADLDHG 110
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 43.6 bits (98), Expect = 1e-05
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 278
SC VYVGN+ ++ ++ IF + G +++ + + P G+ F E+ DP A +V
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 279 RGLDGTRCCGTRIRVE 326
R L+ R+RV+
Sbjct: 64 RNLNNYDAGTRRLRVD 79
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 42.3 bits (95), Expect = 3e-05
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
V+VGNL + ++ + F +G I +V + R +AFVEF++P DA++++ ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 291 GTRCCGTRIRVEMSN 335
+ C IRV +N
Sbjct: 68 YSILCDRCIRVSPAN 82
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 40.7 bits (91), Expect = 1e-04
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Frame = +3
Query: 69 LSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV----------AR 218
LS K K S ++ ++S +YVGNL + ++ ++F +GN + ++
Sbjct: 7 LSEKNKRST-KKCEIS--IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSK 63
Query: 219 NPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSN 335
+P FAF+ FE+ A++++ L+G+ G ++VE ++
Sbjct: 64 SPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTH 102
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = +3
Query: 117 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDS 275
C ++V NL N + ++E++FSK+G I++ +A P G+ FV F P +A +
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQA 478
Query: 276 VRGLDG 293
+ L+G
Sbjct: 479 INTLNG 484
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 3e-04
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
+YVGNL S + +F+ G++ +A P G F V+FE+ DA S+ L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 291 GTRCCGTRIRVEMSN 335
G R G +++ ++
Sbjct: 342 GYRYGGRPLQLSYAH 356
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF----AFVEFEDPRDAEDSVRGL 287
+VYVGNL +E+++ + GN+ N + P G A +E+ +A +++ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 288 DGTRCCGTRIRV 323
+ G + +
Sbjct: 127 SNQKFMGRLVYI 138
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 39.1 bits (87), Expect = 3e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
S V++GNL ++ + EIE+ F K+G I ++ + + AFV F + RDA VR L
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354
Score = 28.3 bits (60), Expect = 0.55
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
S VY ++ + + E+E I +YG I ++ +N FV + + +A +V GL
Sbjct: 499 SRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSS-GFVAYTNISNAMKAVNGL 555
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.7 bits (86), Expect = 4e-04
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---------PPGFAFVEFEDPRDAED 272
+V+VG L T+ K EI +F G +R V + P G AFV F + D +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 273 SVRGLDG 293
++ L+G
Sbjct: 105 AIETLNG 111
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 7e-04
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 254
S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF+++ED
Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Query: 255 PRDAEDSVRGLDGTRCCGTRIRVE 326
R +V + + +RV+
Sbjct: 82 QRSTVLAVDNMTNVKLLDRLVRVD 105
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 37.9 bits (84), Expect = 7e-04
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 251
+YV NL S I +FS YGN++++W+ +P A V +E
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 272
+L ++V + + + E+++IFSK+G + +V + R P GF F+ F +A
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157
Query: 273 SVRGLDGTRCCGTRIRVE 326
++ L+ G + V+
Sbjct: 158 AIDNLNSQEFYGRVLNVQ 175
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.001
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYE-IEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRG 284
++ + NL + K + +E FSK+G +R + + G FAFV +D + AE+++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 285 LDGTRCCGTRIRVE 326
L+GT G I V+
Sbjct: 168 LNGTEIDGRPIAVD 181
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.003
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDGTR 299
V+VG L S+ E++ +F +G I V+V P G FV+F + + AE ++ L G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362
Query: 300 CCGTRIRV 323
+RIR+
Sbjct: 363 LGNSRIRL 370
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDP 257
VYVGN+ + + E++ F+ G++ V + +P GFA++EF +P
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 278
+C V+VG L N + + F +YG I V + G+ +V+FE P A+ +V
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 279 RGLDGTRCCGTRIRVEMSN 335
G + +++SN
Sbjct: 322 AANGTKEIDGRMVNLDLSN 340
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.005
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 209
D S +YVGN+ + S EI K FSKYG + +++
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.1 bits (77), Expect = 0.005
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR--NPPG----FAFVEFEDPRDAE 269
+L ++YVG L ++ ++E FS++G++ N+ + P G FA++ F D
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKW 61
Query: 270 DSVRG-LDGTRCCGTRIRVE 326
+ L G+++R+E
Sbjct: 62 QKCKSYLSNATFKGSKLRIE 81
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.006
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284
++++ NL + ++ +++ +F +G + V + NP GFA+++F D DA +
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 285 LDGTRCCGTRIRV 323
LD G + V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 32.7 bits (71), Expect = 0.026
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP---------GFAFVEFEDPRDAED 272
+YV NL + + E +K+F G + V A+ P GF FVEF+D A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 273 SVRGLDGTRCCGTRIRVEMSN 335
++ ++G G ++ +++S+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSH 701
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 195 IRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
I +V VA+ G FAF+ F++ DA+ ++R L+ + +RI V
Sbjct: 32 ITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEV 78
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.7 bits (76), Expect = 0.006
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +3
Query: 102 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 254
EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV F+D
Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 33.9 bits (74), Expect = 0.011
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+YVGNL + S+ E++ +FS + G R + + FVEFE+ A ++++ L G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486
Query: 300 CCGTRIR 320
C + I+
Sbjct: 487 CLSSSIK 493
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.026
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 254
V+VGNL A + + + F G+I V + R+P GFA+++F+D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.7 bits (71), Expect = 0.026
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 63 PPLSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----- 227
P ++K+K + + D ++VGNL ++S ++ F + G + +V + +
Sbjct: 74 PHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQK 133
Query: 228 GFAFVEFEDPR 260
G+AFVEF +P+
Sbjct: 134 GYAFVEFINPK 144
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.034
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 123 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFVEFEDPRDAEDSVRG 284
++VG L N + Y + +FSKYG + + + P FAF+ F+ + A +V G
Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCG 423
Score = 28.3 bits (60), Expect = 0.55
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +3
Query: 90 SRYREWDLSCKVYVGNLGTNASKYE----IEKIFSKYGNIRNVWVARN--PPGFAFVEFE 251
S R ++C ++V +L ++ S+ E ++ F ++G + +V V ++ ++FV+F+
Sbjct: 71 SSVRGKPVAC-LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQ 129
Query: 252 DPRDAEDSVRGLDGTRCCGTRIRVE 326
+ DA ++ T G IR+E
Sbjct: 130 NTDDASKALSEAQNTILDGRHIRIE 154
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.3 bits (70), Expect = 0.034
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 231 FAFVEFEDPRDAEDSVRGLDGTR 299
FAFVE+ED RDAED+ + G R
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRR 71
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.3 bits (65), Expect = 0.14
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 168 EKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
E+ KYG + ++ V N G FV+FE+ AE ++ GL
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGL 574
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.14
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR---NPPGFAFVEFEDPRDAEDSV 278
++YV N+ ++ ++E F YG + +V + + GF +V +DAE+++
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVR 281
+YV N + +I K+FS YGN+ +V F +V+ P +A ++++
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.14
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
++VGNL + S + FS YG + ++ + + AF+ F+ A+ + L+G R
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKR 646
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.32
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 287
++V L ++E IFS++G I + V R+ +AF+EF++ E + +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 288 DGTRCCGTRIRVEMS 332
+RI V+ S
Sbjct: 306 QNVLIDDSRIHVDFS 320
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.32
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 87 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFE 251
MS + + +Y+GNL + + ++ + G + N+ + R+ GF F EF
Sbjct: 1 MSIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFL 60
Query: 252 DPRDAEDSVRGLDGTRCCGTRIRVEMSN 335
+D E + + L+ + G IRV ++
Sbjct: 61 HEQDVEYACQILNQVKLFGKPIRVNRAS 88
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 0.73
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGLDG 293
+YVGNL + ++ FSK R + + N P FVEFE+ A ++ + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQG 661
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 0.97
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 65 WIKIIHNISLNLIFYSLAT 9
WI +++NIS+ L YSL T
Sbjct: 171 WIGLVYNISITLSLYSLTT 189
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 2.2
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +3
Query: 72 SIKTKMSRYREWDLSCKV-YVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 233
+IK K+S + V YVG L + ++ FS++G + + ++RN +
Sbjct: 89 TIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148
Query: 234 AFVEFE 251
AF+EFE
Sbjct: 149 AFIEFE 154
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 79 KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 180
KL +AT + IF + W+TWVL R +K +F
Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 414 TLTGRESMIGGGDYDCVTCCGLSLCDHLTFRHESWCH 304
T T + GD T + LC+ LT+R E W H
Sbjct: 11 TRTEIPNQASNGDAVPNTDAYMGLCNSLTYRFEGWRH 47
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 159 YEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAE 269
Y+I K F +YG +++V V + AFV F+ AE
Sbjct: 226 YKIRKHFEQYGPLKSV-VCSHRAKCAFVNFKTRSSAE 261
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 339 DHLTFRHESWCHSSVFHQVHEQ 274
DH ++HE C H VHE+
Sbjct: 414 DHKPWKHEEHCSCHEDHSVHER 435
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 69 LSIKTKMSRYREWDLSC 119
+S TK+S + EW LSC
Sbjct: 185 VSRATKLSYFNEWSLSC 201
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 100 ENGIFLAKCTWATWVLMRLNMK 165
+NGI L +W TW+ + +K
Sbjct: 326 DNGIRLENASWRTWMKHKFKLK 347
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 24.2 bits (50), Expect = 9.0
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 317 NPGATA--ACSIKSTNRVFSITGVFEFYKCKSGRISSYPYVTYV 192
N AT A +I+S+ I V FY K GRIS +TYV
Sbjct: 74 NKAATVHIAHAIRSSGESSRIK-VIAFYSFKDGRISLIDELTYV 116
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/69 (21%), Positives = 27/69 (39%)
Frame = +3
Query: 72 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 251
S+ + +R + Y+ + NA I+ YG + W++ P F+ E
Sbjct: 1556 SVASSSDNFRSMNTQLLQYLRSSNINARLLAIQIQTQLYGRLGENWISTLPQSVPFIA-E 1614
Query: 252 DPRDAEDSV 278
D +D V
Sbjct: 1615 LMEDDDDQV 1623
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,944
Number of Sequences: 5004
Number of extensions: 31143
Number of successful extensions: 136
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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