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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0916
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    48   6e-07
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    48   8e-07
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    47   1e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    44   1e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    42   3e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    41   1e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    39   3e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    39   3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    39   4e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    38   7e-04
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    38   7e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    38   0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    37   0.001
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    36   0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      36   0.004
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    36   0.004
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    35   0.005
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    35   0.005
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    35   0.006
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    35   0.006
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    34   0.011
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    33   0.026
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    33   0.026
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    32   0.034
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    32   0.034
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    30   0.14 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    30   0.14 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    30   0.14 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.32 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    29   0.32 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   0.73 
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   0.97 
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    26   2.2  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.2  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   3.0  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   3.9  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   5.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.8  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   6.8  
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         24   9.0  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    24   9.0  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 48.0 bits (109), Expect = 6e-07
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
 Frame = +3

Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAED 272
           D   K+Y+ NL  N  + ++ ++   +G++ +  + +N       GF F EF++P DAE 
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366

Query: 273 SVRGLDGTRCCGTRIRVEMS 332
           ++ GLDG    G ++  + +
Sbjct: 367 AISGLDGKDTYGNKLHAQFA 386



 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 72  SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA 215
           S+KT+ S Y    +  K+   ++GT  S     K+F +Y +IR+  VA
Sbjct: 443 SVKTQFSNYGPL-IDIKI-PRSIGTRNSGLGTGKVFVRYSDIRSAEVA 488


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 26/73 (35%), Positives = 38/73 (52%)
 Frame = +3

Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
           +++VG +   A++ ++   F  YG I +  +     GF FVE ED RDA D V    G  
Sbjct: 5   RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQGKE 61

Query: 300 CCGTRIRVEMSNG 338
             G+RI VE + G
Sbjct: 62  FMGSRIVVEPARG 74


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSVRGL 287
           VYVGNL    ++ +I  +FSK G IR + +      + P GF FVE+ + +DA DS++ +
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93

Query: 288 DGTRCCGTRIRVEMSNG 338
             T      IR ++ +G
Sbjct: 94  SRTSLDERIIRADLDHG 110


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = +3

Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 278
           SC VYVGN+    ++ ++  IF + G +++  +     +  P G+ F E+ DP  A  +V
Sbjct: 4   SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63

Query: 279 RGLDGTRCCGTRIRVE 326
           R L+       R+RV+
Sbjct: 64  RNLNNYDAGTRRLRVD 79


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
           V+VGNL  + ++  +   F  +G I +V + R        +AFVEF++P DA++++  ++
Sbjct: 8   VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67

Query: 291 GTRCCGTRIRVEMSN 335
            +  C   IRV  +N
Sbjct: 68  YSILCDRCIRVSPAN 82


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
 Frame = +3

Query: 69  LSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV----------AR 218
           LS K K S  ++ ++S  +YVGNL +     ++ ++F  +GN     +          ++
Sbjct: 7   LSEKNKRST-KKCEIS--IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSK 63

Query: 219 NPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSN 335
           +P  FAF+ FE+   A++++  L+G+   G  ++VE ++
Sbjct: 64  SPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTH 102



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
 Frame = +3

Query: 117 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDS 275
           C ++V NL  N   +  ++E++FSK+G I++  +A  P      G+ FV F  P +A  +
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQA 478

Query: 276 VRGLDG 293
           +  L+G
Sbjct: 479 INTLNG 484


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
           +YVGNL    S   +  +F+  G++    +A  P G    F  V+FE+  DA  S+  L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341

Query: 291 GTRCCGTRIRVEMSN 335
           G R  G  +++  ++
Sbjct: 342 GYRYGGRPLQLSYAH 356



 Score = 35.5 bits (78), Expect = 0.004
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF----AFVEFEDPRDAEDSVRGL 287
           +VYVGNL      +E+++   + GN+ N  +   P G     A +E+    +A  +++ L
Sbjct: 67  RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126

Query: 288 DGTRCCGTRIRV 323
              +  G  + +
Sbjct: 127 SNQKFMGRLVYI 138


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +3

Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
           S  V++GNL ++  + EIE+ F K+G I ++ +  +    AFV F + RDA   VR L
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354



 Score = 28.3 bits (60), Expect = 0.55
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
           S  VY  ++  + +  E+E I  +YG I ++   +N     FV + +  +A  +V GL
Sbjct: 499 SRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSS-GFVAYTNISNAMKAVNGL 555


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = +3

Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---------PPGFAFVEFEDPRDAED 272
           +V+VG L T+  K EI  +F   G +R V +            P G AFV F +  D + 
Sbjct: 45  RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104

Query: 273 SVRGLDG 293
           ++  L+G
Sbjct: 105 AIETLNG 111


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 37.9 bits (84), Expect = 7e-04
 Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
 Frame = +3

Query: 90  SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 254
           S ++++  S  +Y+GNL  + ++ +I  +FS++G   ++ + R+       GFAF+++ED
Sbjct: 22  SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81

Query: 255 PRDAEDSVRGLDGTRCCGTRIRVE 326
            R    +V  +   +     +RV+
Sbjct: 82  QRSTVLAVDNMTNVKLLDRLVRVD 105


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 37.9 bits (84), Expect = 7e-04
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 251
           +YV NL    S   I  +FS YGN++++W+  +P   A V +E
Sbjct: 2   LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +3

Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 272
           +L   ++V  + +   + E+++IFSK+G + +V + R P      GF F+ F    +A  
Sbjct: 98  NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157

Query: 273 SVRGLDGTRCCGTRIRVE 326
           ++  L+     G  + V+
Sbjct: 158 AIDNLNSQEFYGRVLNVQ 175


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +3

Query: 120 KVYVGNLGTNASKYE-IEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRG 284
           ++ + NL  +  K + +E  FSK+G +R + +     G    FAFV  +D + AE+++  
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167

Query: 285 LDGTRCCGTRIRVE 326
           L+GT   G  I V+
Sbjct: 168 LNGTEIDGRPIAVD 181


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDGTR 299
           V+VG L    S+ E++ +F  +G I  V+V   P  G  FV+F + + AE ++  L G  
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362

Query: 300 CCGTRIRV 323
              +RIR+
Sbjct: 363 LGNSRIRL 370


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDP 257
           VYVGN+  + +  E++  F+  G++  V +       +P GFA++EF +P
Sbjct: 57  VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 278
           +C V+VG L  N     + + F +YG I    V     +    G+ +V+FE P  A+ +V
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321

Query: 279 RGLDGTRCCGTRIRVEMSN 335
                    G  + +++SN
Sbjct: 322 AANGTKEIDGRMVNLDLSN 340


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 209
           D S  +YVGN+ +  S  EI K FSKYG + +++
Sbjct: 14  DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = +3

Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR--NPPG----FAFVEFEDPRDAE 269
           +L  ++YVG L ++    ++E  FS++G++ N+ +     P G    FA++ F    D  
Sbjct: 2   ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKW 61

Query: 270 DSVRG-LDGTRCCGTRIRVE 326
              +  L      G+++R+E
Sbjct: 62  QKCKSYLSNATFKGSKLRIE 81


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +3

Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284
           ++++ NL  + ++ +++ +F  +G +  V +       NP GFA+++F D  DA  +   
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383

Query: 285 LDGTRCCGTRIRV 323
           LD     G  + V
Sbjct: 384 LDAKPFQGRLLHV 396



 Score = 32.7 bits (71), Expect = 0.026
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP---------GFAFVEFEDPRDAED 272
           +YV NL  +  + E +K+F    G +  V  A+  P         GF FVEF+D   A  
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680

Query: 273 SVRGLDGTRCCGTRIRVEMSN 335
           ++  ++G    G ++ +++S+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSH 701



 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 195 IRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
           I +V VA+   G    FAF+ F++  DA+ ++R L+ +    +RI V
Sbjct: 32  ITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEV 78


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +3

Query: 102 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 254
           EWD +  +++VGNLG + +   + + FS+Y ++    V R+      GF FV F+D
Sbjct: 24  EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 33.9 bits (74), Expect = 0.011
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
           +YVGNL  + S+ E++ +FS + G  R  +  +      FVEFE+   A ++++ L G  
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486

Query: 300 CCGTRIR 320
           C  + I+
Sbjct: 487 CLSSSIK 493


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 32.7 bits (71), Expect = 0.026
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 254
           V+VGNL   A +  + + F   G+I  V + R+P      GFA+++F+D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 32.7 bits (71), Expect = 0.026
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
 Frame = +3

Query: 63  PPLSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----- 227
           P  ++K+K  + +  D    ++VGNL  ++S   ++  F + G + +V +  +       
Sbjct: 74  PHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQK 133

Query: 228 GFAFVEFEDPR 260
           G+AFVEF +P+
Sbjct: 134 GYAFVEFINPK 144


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 32.3 bits (70), Expect = 0.034
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 123 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFVEFEDPRDAEDSVRG 284
           ++VG L   N + Y +  +FSKYG + +  +      P FAF+ F+  + A  +V G
Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCG 423



 Score = 28.3 bits (60), Expect = 0.55
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
 Frame = +3

Query: 90  SRYREWDLSCKVYVGNLGTNASKYE----IEKIFSKYGNIRNVWVARN--PPGFAFVEFE 251
           S  R   ++C ++V +L ++ S+ E    ++  F ++G + +V V ++     ++FV+F+
Sbjct: 71  SSVRGKPVAC-LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQ 129

Query: 252 DPRDAEDSVRGLDGTRCCGTRIRVE 326
           +  DA  ++     T   G  IR+E
Sbjct: 130 NTDDASKALSEAQNTILDGRHIRIE 154


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 32.3 bits (70), Expect = 0.034
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 231 FAFVEFEDPRDAEDSVRGLDGTR 299
           FAFVE+ED RDAED+   + G R
Sbjct: 49  FAFVEYEDSRDAEDAYYEVHGRR 71


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 168 EKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
           E+   KYG + ++ V  N  G  FV+FE+   AE ++ GL
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGL 574


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR---NPPGFAFVEFEDPRDAEDSV 278
           ++YV N+    ++ ++E  F  YG + +V + +      GF +V     +DAE+++
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813



 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVR 281
           +YV N      + +I K+FS YGN+ +V            F +V+   P +A ++++
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ 724


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
           ++VGNL +  S   +   FS YG + ++ +  +    AF+ F+    A+  +  L+G R
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKR 646


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 287
           ++V  L       ++E IFS++G I +  V R+        +AF+EF++    E +   +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305

Query: 288 DGTRCCGTRIRVEMS 332
                  +RI V+ S
Sbjct: 306 QNVLIDDSRIHVDFS 320


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = +3

Query: 87  MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFE 251
           MS   + +    +Y+GNL    +   + ++  + G + N+ + R+       GF F EF 
Sbjct: 1   MSIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFL 60

Query: 252 DPRDAEDSVRGLDGTRCCGTRIRVEMSN 335
             +D E + + L+  +  G  IRV  ++
Sbjct: 61  HEQDVEYACQILNQVKLFGKPIRVNRAS 88


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGLDG 293
           +YVGNL     + ++   FSK    R +   +  N P   FVEFE+   A  ++  + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQG 661


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 65  WIKIIHNISLNLIFYSLAT 9
           WI +++NIS+ L  YSL T
Sbjct: 171 WIGLVYNISITLSLYSLTT 189


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +3

Query: 72  SIKTKMSRYREWDLSCKV-YVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 233
           +IK K+S  +       V YVG L     + ++   FS++G +  + ++RN        +
Sbjct: 89  TIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148

Query: 234 AFVEFE 251
           AF+EFE
Sbjct: 149 AFIEFE 154


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 79  KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 180
           KL  +AT + IF    +   W+TWVL R  +K   +F
Sbjct: 5   KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 414 TLTGRESMIGGGDYDCVTCCGLSLCDHLTFRHESWCH 304
           T T   +    GD    T   + LC+ LT+R E W H
Sbjct: 11  TRTEIPNQASNGDAVPNTDAYMGLCNSLTYRFEGWRH 47


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 159 YEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAE 269
           Y+I K F +YG +++V V  +    AFV F+    AE
Sbjct: 226 YKIRKHFEQYGPLKSV-VCSHRAKCAFVNFKTRSSAE 261


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 339 DHLTFRHESWCHSSVFHQVHEQ 274
           DH  ++HE  C     H VHE+
Sbjct: 414 DHKPWKHEEHCSCHEDHSVHER 435


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 69  LSIKTKMSRYREWDLSC 119
           +S  TK+S + EW LSC
Sbjct: 185 VSRATKLSYFNEWSLSC 201


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 100 ENGIFLAKCTWATWVLMRLNMK 165
           +NGI L   +W TW+  +  +K
Sbjct: 326 DNGIRLENASWRTWMKHKFKLK 347


>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 317 NPGATA--ACSIKSTNRVFSITGVFEFYKCKSGRISSYPYVTYV 192
           N  AT   A +I+S+     I  V  FY  K GRIS    +TYV
Sbjct: 74  NKAATVHIAHAIRSSGESSRIK-VIAFYSFKDGRISLIDELTYV 116


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = +3

Query: 72   SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 251
            S+ +    +R  +     Y+ +   NA    I+     YG +   W++  P    F+  E
Sbjct: 1556 SVASSSDNFRSMNTQLLQYLRSSNINARLLAIQIQTQLYGRLGENWISTLPQSVPFIA-E 1614

Query: 252  DPRDAEDSV 278
               D +D V
Sbjct: 1615 LMEDDDDQV 1623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,944
Number of Sequences: 5004
Number of extensions: 31143
Number of successful extensions: 136
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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