BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0916 (442 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 48 6e-07 SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 48 8e-07 SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 47 1e-06 SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 1e-05 SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 3e-05 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 41 1e-04 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 3e-04 SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 39 3e-04 SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 4e-04 SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 7e-04 SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 7e-04 SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.001 SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.001 SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.003 SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.004 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.004 SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.005 SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.005 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.006 SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.006 SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 34 0.011 SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.026 SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.026 SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.034 SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.034 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.14 SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.14 SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.14 SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.32 SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.32 SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 0.73 SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 27 0.97 SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 2.2 SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.2 SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 3.0 SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 3.9 SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 5.2 SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.8 SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 6.8 SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 24 9.0 SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 24 9.0 >SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 48.0 bits (109), Expect = 6e-07 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Frame = +3 Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAED 272 D K+Y+ NL N + ++ ++ +G++ + + +N GF F EF++P DAE Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366 Query: 273 SVRGLDGTRCCGTRIRVEMS 332 ++ GLDG G ++ + + Sbjct: 367 AISGLDGKDTYGNKLHAQFA 386 Score = 25.0 bits (52), Expect = 5.2 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +3 Query: 72 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA 215 S+KT+ S Y + K+ ++GT S K+F +Y +IR+ VA Sbjct: 443 SVKTQFSNYGPL-IDIKI-PRSIGTRNSGLGTGKVFVRYSDIRSAEVA 488 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 47.6 bits (108), Expect = 8e-07 Identities = 26/73 (35%), Positives = 38/73 (52%) Frame = +3 Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299 +++VG + A++ ++ F YG I + + GF FVE ED RDA D V G Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQGKE 61 Query: 300 CCGTRIRVEMSNG 338 G+RI VE + G Sbjct: 62 FMGSRIVVEPARG 74 >SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 182 Score = 47.2 bits (107), Expect = 1e-06 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSVRGL 287 VYVGNL ++ +I +FSK G IR + + + P GF FVE+ + +DA DS++ + Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93 Query: 288 DGTRCCGTRIRVEMSNG 338 T IR ++ +G Sbjct: 94 SRTSLDERIIRADLDHG 110 >SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 43.6 bits (98), Expect = 1e-05 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Frame = +3 Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 278 SC VYVGN+ ++ ++ IF + G +++ + + P G+ F E+ DP A +V Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63 Query: 279 RGLDGTRCCGTRIRVE 326 R L+ R+RV+ Sbjct: 64 RNLNNYDAGTRRLRVD 79 >SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 116 Score = 42.3 bits (95), Expect = 3e-05 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290 V+VGNL + ++ + F +G I +V + R +AFVEF++P DA++++ ++ Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67 Query: 291 GTRCCGTRIRVEMSN 335 + C IRV +N Sbjct: 68 YSILCDRCIRVSPAN 82 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 40.7 bits (91), Expect = 1e-04 Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 10/99 (10%) Frame = +3 Query: 69 LSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV----------AR 218 LS K K S ++ ++S +YVGNL + ++ ++F +GN + ++ Sbjct: 7 LSEKNKRST-KKCEIS--IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSK 63 Query: 219 NPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSN 335 +P FAF+ FE+ A++++ L+G+ G ++VE ++ Sbjct: 64 SPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTH 102 Score = 39.9 bits (89), Expect = 2e-04 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%) Frame = +3 Query: 117 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDS 275 C ++V NL N + ++E++FSK+G I++ +A P G+ FV F P +A + Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQA 478 Query: 276 VRGLDG 293 + L+G Sbjct: 479 INTLNG 484 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 39.1 bits (87), Expect = 3e-04 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290 +YVGNL S + +F+ G++ +A P G F V+FE+ DA S+ L+ Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341 Query: 291 GTRCCGTRIRVEMSN 335 G R G +++ ++ Sbjct: 342 GYRYGGRPLQLSYAH 356 Score = 35.5 bits (78), Expect = 0.004 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +3 Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF----AFVEFEDPRDAEDSVRGL 287 +VYVGNL +E+++ + GN+ N + P G A +E+ +A +++ L Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126 Query: 288 DGTRCCGTRIRV 323 + G + + Sbjct: 127 SNQKFMGRLVYI 138 >SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 654 Score = 39.1 bits (87), Expect = 3e-04 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +3 Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287 S V++GNL ++ + EIE+ F K+G I ++ + + AFV F + RDA VR L Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354 Score = 28.3 bits (60), Expect = 0.55 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +3 Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287 S VY ++ + + E+E I +YG I ++ +N FV + + +A +V GL Sbjct: 499 SRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSS-GFVAYTNISNAMKAVNGL 555 >SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 38.7 bits (86), Expect = 4e-04 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Frame = +3 Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---------PPGFAFVEFEDPRDAED 272 +V+VG L T+ K EI +F G +R V + P G AFV F + D + Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 273 SVRGLDG 293 ++ L+G Sbjct: 105 AIETLNG 111 >SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 37.9 bits (84), Expect = 7e-04 Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Frame = +3 Query: 90 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 254 S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF+++ED Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81 Query: 255 PRDAEDSVRGLDGTRCCGTRIRVE 326 R +V + + +RV+ Sbjct: 82 QRSTVLAVDNMTNVKLLDRLVRVD 105 >SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 661 Score = 37.9 bits (84), Expect = 7e-04 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 251 +YV NL S I +FS YGN++++W+ +P A V +E Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43 >SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 37.5 bits (83), Expect = 0.001 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = +3 Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 272 +L ++V + + + E+++IFSK+G + +V + R P GF F+ F +A Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157 Query: 273 SVRGLDGTRCCGTRIRVE 326 ++ L+ G + V+ Sbjct: 158 AIDNLNSQEFYGRVLNVQ 175 >SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 37.1 bits (82), Expect = 0.001 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Frame = +3 Query: 120 KVYVGNLGTNASKYE-IEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRG 284 ++ + NL + K + +E FSK+G +R + + G FAFV +D + AE+++ Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167 Query: 285 LDGTRCCGTRIRVE 326 L+GT G I V+ Sbjct: 168 LNGTEIDGRPIAVD 181 >SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 35.9 bits (79), Expect = 0.003 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDGTR 299 V+VG L S+ E++ +F +G I V+V P G FV+F + + AE ++ L G Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362 Query: 300 CCGTRIRV 323 +RIR+ Sbjct: 363 LGNSRIRL 370 >SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 35.5 bits (78), Expect = 0.004 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDP 257 VYVGN+ + + E++ F+ G++ V + +P GFA++EF +P Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 35.5 bits (78), Expect = 0.004 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%) Frame = +3 Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 278 +C V+VG L N + + F +YG I V + G+ +V+FE P A+ +V Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 279 RGLDGTRCCGTRIRVEMSN 335 G + +++SN Sbjct: 322 AANGTKEIDGRMVNLDLSN 340 >SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 35.1 bits (77), Expect = 0.005 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +3 Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 209 D S +YVGN+ + S EI K FSKYG + +++ Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47 >SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 35.1 bits (77), Expect = 0.005 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Frame = +3 Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR--NPPG----FAFVEFEDPRDAE 269 +L ++YVG L ++ ++E FS++G++ N+ + P G FA++ F D Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKW 61 Query: 270 DSVRG-LDGTRCCGTRIRVE 326 + L G+++R+E Sbjct: 62 QKCKSYLSNATFKGSKLRIE 81 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 34.7 bits (76), Expect = 0.006 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = +3 Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284 ++++ NL + ++ +++ +F +G + V + NP GFA+++F D DA + Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383 Query: 285 LDGTRCCGTRIRV 323 LD G + V Sbjct: 384 LDAKPFQGRLLHV 396 Score = 32.7 bits (71), Expect = 0.026 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP---------GFAFVEFEDPRDAED 272 +YV NL + + E +K+F G + V A+ P GF FVEF+D A Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680 Query: 273 SVRGLDGTRCCGTRIRVEMSN 335 ++ ++G G ++ +++S+ Sbjct: 681 AMHAMNGFVLDGHKLEIKLSH 701 Score = 25.0 bits (52), Expect = 5.2 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = +3 Query: 195 IRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323 I +V VA+ G FAF+ F++ DA+ ++R L+ + +RI V Sbjct: 32 ITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEV 78 >SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 34.7 bits (76), Expect = 0.006 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +3 Query: 102 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 254 EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV F+D Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79 >SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 33.9 bits (74), Expect = 0.011 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299 +YVGNL + S+ E++ +FS + G R + + FVEFE+ A ++++ L G Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486 Query: 300 CCGTRIR 320 C + I+ Sbjct: 487 CLSSSIK 493 >SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 32.7 bits (71), Expect = 0.026 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 254 V+VGNL A + + + F G+I V + R+P GFA+++F+D Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320 >SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 233 Score = 32.7 bits (71), Expect = 0.026 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Frame = +3 Query: 63 PPLSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----- 227 P ++K+K + + D ++VGNL ++S ++ F + G + +V + + Sbjct: 74 PHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQK 133 Query: 228 GFAFVEFEDPR 260 G+AFVEF +P+ Sbjct: 134 GYAFVEFINPK 144 >SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 32.3 bits (70), Expect = 0.034 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = +3 Query: 123 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFVEFEDPRDAEDSVRG 284 ++VG L N + Y + +FSKYG + + + P FAF+ F+ + A +V G Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCG 423 Score = 28.3 bits (60), Expect = 0.55 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%) Frame = +3 Query: 90 SRYREWDLSCKVYVGNLGTNASKYE----IEKIFSKYGNIRNVWVARN--PPGFAFVEFE 251 S R ++C ++V +L ++ S+ E ++ F ++G + +V V ++ ++FV+F+ Sbjct: 71 SSVRGKPVAC-LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQ 129 Query: 252 DPRDAEDSVRGLDGTRCCGTRIRVE 326 + DA ++ T G IR+E Sbjct: 130 NTDDASKALSEAQNTILDGRHIRIE 154 >SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 32.3 bits (70), Expect = 0.034 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 Query: 231 FAFVEFEDPRDAEDSVRGLDGTR 299 FAFVE+ED RDAED+ + G R Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRR 71 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 30.3 bits (65), Expect = 0.14 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 168 EKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287 E+ KYG + ++ V N G FV+FE+ AE ++ GL Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGL 574 >SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces pombe|chr 2|||Manual Length = 1014 Score = 30.3 bits (65), Expect = 0.14 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +3 Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR---NPPGFAFVEFEDPRDAEDSV 278 ++YV N+ ++ ++E F YG + +V + + GF +V +DAE+++ Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813 Score = 27.1 bits (57), Expect = 1.3 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVR 281 +YV N + +I K+FS YGN+ +V F +V+ P +A ++++ Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ 724 >SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1060 Score = 30.3 bits (65), Expect = 0.14 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299 ++VGNL + S + FS YG + ++ + + AF+ F+ A+ + L+G R Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKR 646 >SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating transcription Rct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 29.1 bits (62), Expect = 0.32 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 287 ++V L ++E IFS++G I + V R+ +AF+EF++ E + + Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305 Query: 288 DGTRCCGTRIRVEMS 332 +RI V+ S Sbjct: 306 QNVLIDDSRIHVDFS 320 >SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 29.1 bits (62), Expect = 0.32 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Frame = +3 Query: 87 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFE 251 MS + + +Y+GNL + + ++ + G + N+ + R+ GF F EF Sbjct: 1 MSIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFL 60 Query: 252 DPRDAEDSVRGLDGTRCCGTRIRVEMSN 335 +D E + + L+ + G IRV ++ Sbjct: 61 HEQDVEYACQILNQVKLFGKPIRVNRAS 88 >SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces pombe|chr 3|||Manual Length = 761 Score = 27.9 bits (59), Expect = 0.73 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +3 Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGLDG 293 +YVGNL + ++ FSK R + + N P FVEFE+ A ++ + G Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQG 661 >SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 426 Score = 27.5 bits (58), Expect = 0.97 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -3 Query: 65 WIKIIHNISLNLIFYSLAT 9 WI +++NIS+ L YSL T Sbjct: 171 WIGLVYNISITLSLYSLTT 189 >SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccharomyces pombe|chr 3|||Manual Length = 276 Score = 26.2 bits (55), Expect = 2.2 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Frame = +3 Query: 72 SIKTKMSRYREWDLSCKV-YVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 233 +IK K+S + V YVG L + ++ FS++G + + ++RN + Sbjct: 89 TIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148 Query: 234 AFVEFE 251 AF+EFE Sbjct: 149 AFIEFE 154 >SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 122 Score = 26.2 bits (55), Expect = 2.2 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +1 Query: 79 KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 180 KL +AT + IF + W+TWVL R +K +F Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41 >SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 498 Score = 25.8 bits (54), Expect = 3.0 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -2 Query: 414 TLTGRESMIGGGDYDCVTCCGLSLCDHLTFRHESWCH 304 T T + GD T + LC+ LT+R E W H Sbjct: 11 TRTEIPNQASNGDAVPNTDAYMGLCNSLTYRFEGWRH 47 >SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces pombe|chr 3|||Manual Length = 354 Score = 25.4 bits (53), Expect = 3.9 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 159 YEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAE 269 Y+I K F +YG +++V V + AFV F+ AE Sbjct: 226 YKIRKHFEQYGPLKSV-VCSHRAKCAFVNFKTRSSAE 261 >SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharomyces pombe|chr 2|||Manual Length = 774 Score = 25.0 bits (52), Expect = 5.2 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = -2 Query: 339 DHLTFRHESWCHSSVFHQVHEQ 274 DH ++HE C H VHE+ Sbjct: 414 DHKPWKHEEHCSCHEDHSVHER 435 >SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1568 Score = 24.6 bits (51), Expect = 6.8 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 69 LSIKTKMSRYREWDLSC 119 +S TK+S + EW LSC Sbjct: 185 VSRATKLSYFNEWSLSC 201 >SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 873 Score = 24.6 bits (51), Expect = 6.8 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = +1 Query: 100 ENGIFLAKCTWATWVLMRLNMK 165 +NGI L +W TW+ + +K Sbjct: 326 DNGIRLENASWRTWMKHKFKLK 347 >SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 24.2 bits (50), Expect = 9.0 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -3 Query: 317 NPGATA--ACSIKSTNRVFSITGVFEFYKCKSGRISSYPYVTYV 192 N AT A +I+S+ I V FY K GRIS +TYV Sbjct: 74 NKAATVHIAHAIRSSGESSRIK-VIAFYSFKDGRISLIDELTYV 116 >SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1649 Score = 24.2 bits (50), Expect = 9.0 Identities = 15/69 (21%), Positives = 27/69 (39%) Frame = +3 Query: 72 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 251 S+ + +R + Y+ + NA I+ YG + W++ P F+ E Sbjct: 1556 SVASSSDNFRSMNTQLLQYLRSSNINARLLAIQIQTQLYGRLGENWISTLPQSVPFIA-E 1614 Query: 252 DPRDAEDSV 278 D +D V Sbjct: 1615 LMEDDDDQV 1623 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,666,944 Number of Sequences: 5004 Number of extensions: 31143 Number of successful extensions: 136 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 127 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 160149590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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