Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0916
(442 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 9e-24
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 105 2e-23
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 78 4e-15
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 62 2e-10
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 55 3e-08
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 50 6e-07
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 45 2e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 45 3e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 6e-05
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 44 7e-05
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 43 1e-04
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 42 3e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 40 7e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 39 0.002
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 38 0.005
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.011
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 36 0.015
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 35 0.026
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 35 0.026
SB_32274| Best HMM Match : RRM_1 (HMM E-Value=0.0026) 34 0.045
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.060
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.060
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.060
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 33 0.10
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 32 0.18
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 31 0.32
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.32
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.32
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 31 0.42
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 31 0.56
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 30 0.74
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 0.74
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 30 0.74
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 30 0.97
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.3
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_46001| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2) 29 1.7
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 3.9
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2) 27 5.2
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 27 9.1
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 27 9.1
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 27 9.1
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 106 bits (254), Expect = 9e-24
Identities = 47/73 (64%), Positives = 57/73 (78%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+VY+GN+G NASK EIE+ F +G +R+VWVARNPPGFAF FED RDAED+VR LDG
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRY 62
Query: 300 CCGTRIRVEMSNG 338
CG R RVE++ G
Sbjct: 63 ICGQRARVELAKG 75
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 105 bits (252), Expect = 2e-23
Identities = 47/73 (64%), Positives = 57/73 (78%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
KVY+G+LG NASK EIE F YG +++VWVARNPPGFAF F+D RDAED+VR LDG
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRY 92
Query: 300 CCGTRIRVEMSNG 338
CG R+RVE++ G
Sbjct: 93 ICGQRVRVELAKG 105
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 105 bits (251), Expect = 2e-23
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
++ K+YVGNLG NA E+E+ F K+G + VWVARNPPGFAFVE+ED RDAE++VR LD
Sbjct: 2 MTTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELD 61
Query: 291 GTRCCGTRIRVEMSN 335
G C IRVE SN
Sbjct: 62 GANVCDRTIRVEFSN 76
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 77.8 bits (183), Expect = 4e-15
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Frame = +3
Query: 117 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP---PGFAFVEFEDPRDAEDSVRGL 287
C+VYVGNL + + ++ IF KYG+I +V + P FAFVEFEDPRDAED+V+G
Sbjct: 261 CRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGR 320
Query: 288 DGTRCCGTRIRVEMSNG 338
DG G RIRVE G
Sbjct: 321 DGHEFDGYRIRVEFPRG 337
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 62.1 bits (144), Expect = 2e-10
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
++C+VY+G L ++ ++ + F YG +R++ + N + FVEFED RDA+D+V +
Sbjct: 1 MNCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDAVYECN 57
Query: 291 GTRCCGTRIRVEMSNG 338
G G RI VE S G
Sbjct: 58 GKEMLGERILVEHSRG 73
Score = 30.3 bits (65), Expect = 0.74
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
++ + NL + S +++ + G++ + G +EF RD + +++ LDG
Sbjct: 98 RMTIENLSSRVSWQDLKDFCRQVGDVTYGDAHKQRQGEGVIEFSCKRDLKRALKKLDGEE 157
Query: 300 CCGTRIRV 323
G RIR+
Sbjct: 158 LNGKRIRL 165
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 54.8 bits (126), Expect = 3e-08
Identities = 27/59 (45%), Positives = 37/59 (62%)
Frame = +3
Query: 162 EIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 338
++EK YG IR++ + R G+ FVEF+D RDAED+V L+G G R+ VE S G
Sbjct: 704 DVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKG 759
Score = 40.7 bits (91), Expect = 5e-04
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
V V NL + S +++ F KYG + + G VEFE D ++ LD T
Sbjct: 800 VIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTEL 859
Query: 303 CGTRIRV 323
G RIRV
Sbjct: 860 GGRRIRV 866
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 290
++V NL +A + EIE++FSK+G ++ V + N P G+ +VE+E A +V LD
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 291 GTRCCGTRIRVEMSN 335
T G I V +SN
Sbjct: 233 KTEVKGRTISVALSN 247
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 50.4 bits (115), Expect = 6e-07
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 284
K+YV +L N +K +++IFS YG ++ V + + GFA+VE+ DP + E +++
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKH 1217
Query: 285 LDGTRCCGTRIRVE 326
+DG + G I V+
Sbjct: 1218 MDGGQIDGQEIAVQ 1231
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
S +VY G L + + ++EK YG +R + + G+ FVEF+D RDA+D V L+G
Sbjct: 4 STRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDLNG 60
Query: 294 TRCCGTR 314
G R
Sbjct: 61 RNLLGER 67
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 162 EIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 338
++++ K G + + G VEF D + +++ LD T G RIR+++ +G
Sbjct: 127 DLKEYMGKVGEVTFADAHKRRQGEGVVEFATKDDMKTALKKLDDTEFFGKRIRLKIKDG 185
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 48.0 bits (109), Expect = 3e-06
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Frame = +3
Query: 81 TKMSRYREWDLS----CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGF 233
+++ +Y +DL CK Y+GNL ++ +++ FS+Y ++ +V V + P GF
Sbjct: 214 SRLLKYSYFDLKMGEECKCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGF 272
Query: 234 AFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMS 332
AFV F ++ ED++ LDG G ++V +
Sbjct: 273 AFVTFGSKKNMEDAINELDGQEFDGRSMKVNQA 305
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+++VG L ++E +F YG + + + F+E+EDPRDAE+++R + +
Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKT---AYGFIEYEDPRDAEEAMRRENNRK 63
Query: 300 CCGTRIRVE 326
G+RI VE
Sbjct: 64 LFGSRIVVE 72
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 45.2 bits (102), Expect = 2e-05
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 117 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
C++++GNL T+ ++ ++E+IFS++G + + N F FV+FE + A+++V G
Sbjct: 46 CRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEAVAKEHG 102
Query: 294 TRCCGTRIRVEMSN 335
G +I V + N
Sbjct: 103 RIINGKKIDVRIVN 116
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +3
Query: 72 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFA 236
+++T + R L C+VYVG++ + I F +G I + ++ +P GFA
Sbjct: 87 ALQTAAQKQRALALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFA 146
Query: 237 FVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
FVE++ P A+ ++ ++G G I+V
Sbjct: 147 FVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 44.4 bits (100), Expect = 4e-05
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +3
Query: 102 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 266
E D + V NL + +++++F KYG++ ++++ R+ GFAFV F + RDA
Sbjct: 11 EIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDA 70
Query: 267 EDSVRGLDGT 296
ED++ +D T
Sbjct: 71 EDAMDCMDAT 80
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +3
Query: 99 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSV 278
R++ C+++VGNL + + E++++F KYG + V++ + GF F+ + AE +
Sbjct: 47 RKFTGRCRLFVGNL-IDCDEEEMKEMFKKYGEVAEVFINKEK-GFGFIRLDTRLHAEAAK 104
Query: 279 RGLDGTRCCGTRIRVEMS 332
GLD G +RV +
Sbjct: 105 AGLDMATRKGRTLRVRFA 122
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 43.6 bits (98), Expect = 7e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGLD 290
VYV N G + ++++I ++ G I ++ V +P GF FV FE P +AE++V L+
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
Query: 291 GTRCCGTRI 317
G G R+
Sbjct: 171 GKEIGGRRL 179
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/72 (30%), Positives = 41/72 (56%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
+S KVY G L A++ ++E + +G +R V G+A+V F++ +DA+ +V L+
Sbjct: 1 MSGKVYCGRLPATATEKDLENLVKVFGKVREVDFKE---GYAYVVFKENKDADRAVAALN 57
Query: 291 GTRCCGTRIRVE 326
+ G +I +E
Sbjct: 58 NSEFHGAKILME 69
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+V V NL T A E+++ + G + R PG VEF D + ++ LD
Sbjct: 103 RVIVENLSTRAKWLELKEFMNNAGEVCYADTHRRRPGEGVVEFTTEEDMKRAIASLDKCE 162
Query: 300 CCGTRIRV 323
G RIR+
Sbjct: 163 FYGKRIRL 170
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 287
++V N+ A + +I ++FS YG I+N+ V + G+A VE+E ++A+ ++ L
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 288 DGTRCCGTRIRVE 326
+G G I V+
Sbjct: 355 NGAEMLGQNISVD 367
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYG---NIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGL 287
V+VGN+ AS+ ++++IFS+ G + R V+ P G+ F E++D A ++R L
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 288 DGTRCCGTRIRVE 326
+G G +RV+
Sbjct: 87 NGYELNGRALRVD 99
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 40.3 bits (90), Expect = 7e-04
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +3
Query: 54 NFYPPLSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---- 221
N Y S+ + +R + D K++VG L +K +++ FSKYG + V + +
Sbjct: 8 NGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTG 67
Query: 222 -PPGFAFVEFEDPRDAE 269
P GFAFV+F+ +A+
Sbjct: 68 RPRGFAFVQFKHQSEAD 84
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 287
VYVGNL + + ++ K+F +YG + V + R+ G AF+ F D + A+++V +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 288 DGTRCCGTRIR 320
+ + G I+
Sbjct: 72 NKKQMFGRTIK 82
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
+S +VY+G L + +++K F YG + + G+ FVEF+ DAED+V +
Sbjct: 1 MSNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKD-GYGFVEFDYSDDAEDAVYECN 59
Query: 291 GTRCCG 308
G + G
Sbjct: 60 GKKMLG 65
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN--------PPGFAFVEFEDPRDAEDS 275
K+++GNL S++ I KI ++G I + + P G+ FVEF+ DA +
Sbjct: 388 KLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKA 447
Query: 276 VRGLD 290
+RGL+
Sbjct: 448 LRGLN 452
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 242
L+ VYVGNL + YE++++FS+YG+I V + G+AF+
Sbjct: 613 LNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
Score = 32.7 bits (71), Expect = 0.14
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +3
Query: 90 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPR 260
+RY + + +YVGNL ++ I IF+K + + +P + FVEFE
Sbjct: 360 ARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHA 419
Query: 261 DAEDSVRGLDGTRCCGTRIRV 323
DA+++ +D +++V
Sbjct: 420 DAQEAKFRMDQRTVMDKKLKV 440
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +3
Query: 165 IEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
I+++FS+ GN+ VA NP GFAFV++ +AE R +G + G+ IRV
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRGL 287
++VGNL ++ + + S YGNI +++ R + G+ FVE+ +A + + L
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
Query: 288 DGT 296
T
Sbjct: 175 LNT 177
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
+YV N+ S+ +++ +F+KYG I V R+ + FV F A ++ G++G
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRD---YGFVYFAKRESAVQAIDGINGAYI 60
Query: 303 CGTRIRVEMS 332
G ++ V ++
Sbjct: 61 DGCKLEVSLA 70
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 37.5 bits (83), Expect = 0.005
Identities = 13/54 (24%), Positives = 34/54 (62%)
Frame = +3
Query: 165 IEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 326
++ +FS++GN+ +VW+ + F + +F + A+ +++GL G G +++++
Sbjct: 354 LKDVFSRFGNLIDVWMMKE-RNFGYAKFAAKQSADAAIQGLHGHDVLGMKLKID 406
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 36.7 bits (81), Expect = 0.008
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 213 ARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 338
A P G+AF+E+E RD + + DG + G RI V++ G
Sbjct: 43 ASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVERG 84
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.3 bits (80), Expect = 0.011
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYG-NIRNVWVARNPP------------GFAFVEFEDPR 260
KVY GNL ++ E++ +F + +V + + P GF FV F +P
Sbjct: 51 KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110
Query: 261 DAEDSVRGLDGTRCCGTRIRVEMS 332
DA+ +V+ L+G G +++ S
Sbjct: 111 DAQTAVKSLNGKEVQGRTLKIAPS 134
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 35.9 bits (79), Expect = 0.015
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 75 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFV 242
I+ +M++ +E D + +Y+ NL N + +E +FSKYG + + + R N G F
Sbjct: 166 IQAQMAKQQEQDPT-NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFA 224
Query: 243 EFEDPRDAEDSVR 281
E E ++
Sbjct: 225 RMESAEKCEQVIK 237
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 287
+Y+ L N + ++ ++ KYG I + + G+ FV+FE P A+ +V L
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAAL 161
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 35.5 bits (78), Expect = 0.020
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYG---NIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
V++GNL +A + + F + G R + GF + +F D ++ L+G
Sbjct: 182 VFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKALE-LNG 240
Query: 294 TRCCGTRIRVEMSN 335
CCG IR+ +N
Sbjct: 241 EDCCGREIRINPAN 254
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 35.5 bits (78), Expect = 0.020
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 287
+YV N+ + E K F YGNI N + R+ P G FV ++ +A+ ++ L
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 288 DGTRCCGTRIRVEM 329
GT G+ + +++
Sbjct: 195 SGTFFPGSTMGLQI 208
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 117 CKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVR 281
C +YV N+G +A++ I +F + G + V W + GF FV +A+++++
Sbjct: 275 CTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQ 334
Query: 282 GLDG 293
L+G
Sbjct: 335 TLNG 338
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 35.1 bits (77), Expect = 0.026
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +3
Query: 102 EWDLSCK--VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG--FAFVEFEDPRDAE 269
E+D C ++VGN+ + ++++ F +YG + +V + + P +AFV+F + A
Sbjct: 242 EFDPGCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAI 301
Query: 270 DSVRGLDGTRCCGTRIRV 323
+ R +D R++V
Sbjct: 302 QARRKMDREYVGRNRVKV 319
Score = 32.3 bits (70), Expect = 0.18
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
++VG + + S+ ++E+ F +YG + V V A V F+ A + + G
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV-VINRVTNQALVSFDSVDSATIAHAQMKGRTM 388
Query: 303 CGTRIRVE 326
R+RVE
Sbjct: 389 FSRRVRVE 396
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV--ARNPPG--FAFVEFEDPRDA 266
++VGNL N + +I K F++YG + +V + R+ G +FV+F D R A
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSA 59
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 35.1 bits (77), Expect = 0.026
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = +3
Query: 102 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRD 263
+WD + +++ G+LG+ + + + F+KY + + R+ G+ FV F+DP D
Sbjct: 211 QWDPNDFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPND 270
Query: 264 AEDSVRGLD 290
++R ++
Sbjct: 271 FIKAMREMN 279
>SB_32274| Best HMM Match : RRM_1 (HMM E-Value=0.0026)
Length = 284
Score = 34.3 bits (75), Expect = 0.045
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 GTNASKYEIEKIFS---KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGT 311
G N K E+IF+ YGN+ V N PG V+ D +E +R L G
Sbjct: 220 GLNHEKMNCERIFNLFCLYGNVIKVKFLTNKPGACMVQMSDKIASEMIIRNLSGATIFDN 279
Query: 312 RIRV 323
+I +
Sbjct: 280 KINI 283
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.060
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 126 YVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGLD 290
YVG L + + F +G+I +V + GF FVEFE D ++ ++
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 291 GTRCCGTRIRVEMS 332
+ G IRV ++
Sbjct: 68 ESELFGRTIRVNLA 81
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 33.9 bits (74), Expect = 0.060
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEK----IFSKYGNIRNVWVARNPP--GFAFVEFEDPRDAEDSVRG 284
+Y+ NL K E++K IFS++G I ++ + G AFV F+D A +++R
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRS 68
Query: 285 LDGTRCCGTRIRVEMSNG 338
+ G +R++ + G
Sbjct: 69 MQGFPFYDKPMRIQYAKG 86
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.9 bits (74), Expect = 0.060
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 287
+YVG L S+ I ++F + G + NV + ++ G+ FVEF DA+ +++ +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 288 DGTRCCGTRIRVEMSN 335
+ + G IRV ++
Sbjct: 75 NMIKVYGKPIRVNKAS 90
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 33.1 bits (72), Expect = 0.10
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 287
++V L + ++E IFS++G I + V R+ +AF+EFE D E + +
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKM 181
Query: 288 DGTRCCGTRIRVEMS 332
D RI V+ S
Sbjct: 182 DNVLIDDRRIHVDFS 196
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 75 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 197
+ +S+Y+ CKV+VGN+G E++ F +G++
Sbjct: 65 VSKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFGDV 105
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.1 bits (72), Expect = 0.10
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 284
K+Y+GNL N+ + EIE+ F ++G + V + R+ GF FV + ++
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 285 LDGTRCCGTRIRVEMS 332
++ + G I V ++
Sbjct: 69 MNQSSVGGRNITVALA 84
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 32.3 bits (70), Expect = 0.18
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 72 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAF 239
SI+ +S E D +Y+ + + K +E +F YG I ++ + R GF +
Sbjct: 49 SIQELLSHKEEHDQRT-IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGY 107
Query: 240 VEFEDPRDAEDSVRGLDGT 296
V +E +AE + R L GT
Sbjct: 108 VTYE---NAESAQRALAGT 123
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 31.5 bits (68), Expect = 0.32
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV 206
V+VGNL K ++K FSKYG + +V
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.5 bits (68), Expect = 0.32
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
VY+ NL + ++ ++++ +S+YG + V ++ +AFV F + A ++ DG
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKD---YAFVHFTERDHALKAIEETDGKEM 387
Query: 303 CGTRIRVEMS 332
G +I ++
Sbjct: 388 DGLKIEASLA 397
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.5 bits (68), Expect = 0.32
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
++ V NL T A +++ + G + ++ G +F + D +++ LDGT
Sbjct: 344 RLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVGEGVCDFSNESDMLYALKKLDGTE 403
Query: 300 CCGTRIR-VEMS 332
G RIR VE+S
Sbjct: 404 LFGKRIRLVEIS 415
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 31.1 bits (67), Expect = 0.42
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
++VGNL T S ++ F K+G + +V + R G +AFV+F D A + +
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 291 GTRCCG 308
G +C G
Sbjct: 299 G-QCIG 303
Score = 30.7 bits (66), Expect = 0.56
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+++VG LG S E+E+ F ++G IR + R A++ ++ A + R + G +
Sbjct: 319 RLWVGGLGPWISIPELEREFDRFGAIRRI-DYRKGGDHAYILYDSLDAASVAAREMRGFQ 377
Query: 300 CCGTRIRVEMSN 335
R+R++ ++
Sbjct: 378 MGDRRLRIDFAD 389
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 31.1 bits (67), Expect = 0.42
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDS 275
D+S +++V ++ E+ F +YG ++ + R+ G+AF+ FE ++ D
Sbjct: 5 DISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFES-QEVADG 63
Query: 276 VR---GLD 290
+R GLD
Sbjct: 64 LRDNKGLD 71
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.7 bits (66), Expect = 0.56
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 206
S +V++GNL + ++ ++FSKYG I +
Sbjct: 356 SHQVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 30.3 bits (65), Expect = 0.74
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 287
V++GNL + + + ++F+ GN+ +V + R+ GF +V FE +DA +
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFES-KDAVVFALKM 116
Query: 288 DGTRCCGTRIRV 323
+ G +IRV
Sbjct: 117 NNAEFKGRKIRV 128
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.3 bits (65), Expect = 0.74
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 228 GFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
GF FV E+ D ED R DG G R++V
Sbjct: 84 GFGFVTLENQEDLEDVTRKFDGFEYEGRRLKV 115
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 30.3 bits (65), Expect = 0.74
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +3
Query: 165 IEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVR 281
++K+FS++G + V + R GFAF+EFE + AE V+
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQ 147
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 29.9 bits (64), Expect = 0.97
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +3
Query: 144 TNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAE----DSVRGLDGT 296
T AS + + F K+G ++ V R+P GF F+ F+DP+ + + LDG
Sbjct: 117 TQASAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGK 176
Query: 297 RCCGTRIRV 323
+ T ++
Sbjct: 177 KMVTTTKKI 185
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 132 GNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
G L + I ++FS YG + V V ++FV ++ +A +++R L+G
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERV-VMLPQRSYSFVSYKSHNNALNAMRNLNG 107
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
++V L A+ + K+FS YG I N+ + + G+ FV + +A ++ L+GT
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIEL-KLDKGYGFVNMSNYEEACHAICCLNGT 330
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +3
Query: 102 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 248
E ++ K++VG L + ++ + + F+++G + +V++ + F FV F
Sbjct: 194 ELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTF 242
>SB_46001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 405 GRESMIGGGDYDCVTCCGLSLCDHLT 328
GR+ I GDYD V C G+ H+T
Sbjct: 30 GRKLNISDGDYDAVACVGVFTKGHVT 55
>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
Length = 207
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 405 GRESMIGGGDYDCVTCCGLSLCDHLT 328
GR+ I GDYD V C G+ H+T
Sbjct: 122 GRKLNISDGDYDAVACVGVFTKGHVT 147
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA------RNPP-GFAFVEFEDPRDAEDSV 278
++ + NL N ++ +++ FS +G + V RN GF FV+F + DA ++
Sbjct: 248 RLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKAL 307
Query: 279 RGLDGTRCCGTRIRVE 326
++ + G + V+
Sbjct: 308 EEMNAKKILGRPVAVD 323
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFED 254
D K++VG L + + + F YG + +V V + GF +V F D
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFAD 64
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 186 YGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 326
YG I NV + R+ GF F+ +ED R +V +G + G IRV+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVD 53
>SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2)
Length = 198
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 280 VDLMEHAAVAPGFVSKCQMVAQGETAAGHAVVVPAADHTLAAGQCLHD 423
+DL+EH F S +V G+ + H+ V ++ G+C D
Sbjct: 65 LDLIEHTPEVAEFFSPQFLVRSGKKSEDHSKEVHEVGSAMSLGKCTRD 112
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +3
Query: 96 YREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDS 275
Y W ++ V N TN E +S G W N F F E+ DP + +
Sbjct: 48 YGSWPINTNVVPANAATNTRASSNE--YSAIGAESTAW---NAGSFGFCEYSDPEASLRA 102
Query: 276 VR 281
+R
Sbjct: 103 IR 104
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 284
+ Y+GNL + + +E+ F ++ +V V + P GF FV F + E ++
Sbjct: 6 RCYIGNLSYSVDEQALEEKFHGC-DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDE 64
Query: 285 LDGTRCCGTRIRVEMS 332
DG G ++V +
Sbjct: 65 FDGQDFDGRPMKVNQA 80
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 162 EIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGLDG 293
+I F +YG I +VWV ++ G +V+F A + +DG
Sbjct: 38 DIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDG 86
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 156 KYEIEKIFSKYGNIRNVWVARNPP---GFAFVEFEDPRDAEDSVRGLDG 293
K I K+FSK+G I G+ F+EF + DA +V+ +G
Sbjct: 91 KNVIRKVFSKFGQIVTEHYPMEKDLTRGYIFLEFSNASDAVRAVKTANG 139
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 228 GFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
G +EF +D + ++R LDG G RIR+
Sbjct: 204 GEGVIEFATKKDLKKALRKLDGKELKGKRIRL 235
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 342 CDHLTFRHESWCHSSVFH 289
C H T H +WCH + H
Sbjct: 296 CGHPTKTHANWCHPTTTH 313
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 165 IEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGLDG--TRCCGTRIRVE 326
++++++ R+V + RN GF FVEF+ P A++ + L G + G I VE
Sbjct: 348 LQELYAAEVAFRDVRIVRNKIGYTRGFGFVEFDTPEAAKEWMDYLKGGPLKVLGYNIGVE 407
Query: 327 MS 332
S
Sbjct: 408 YS 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,451
Number of Sequences: 59808
Number of extensions: 239163
Number of successful extensions: 701
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -