Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0916
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.85 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.85 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 220 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 101
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 220 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 101
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  PPLSIKTKMSRYREWDLSCKVY 128
           P L I + M R   W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  PPLSIKTKMSRYREWDLSCKVY 128
           P L I + M R   W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 435 LKATVVETLTGRESMIGGGDYDCVTCCGLSLCDHL 331
           +K TVV +    + ++G  ++ CV  C + +  +L
Sbjct: 321 IKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYL 355


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 435 LKATVVETLTGRESMIGGGDYDCVTCCGLSLCDHL 331
           +K TVV +    + ++G  ++ CV  C + +  +L
Sbjct: 236 IKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYL 270


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 435 LKATVVETLTGRESMIGGGDYDCVTCCGLSLCDHL 331
           +K TVV +    + ++G  ++ CV  C + +  +L
Sbjct: 555 IKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYL 589


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 AKCTWATWVLMRLNMK 165
           +KCTW      R+N+K
Sbjct: 68  SKCTWTITSYHRINLK 83


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 364 HAVVVPAADHTLAAGQCLHDGR 429
           HA   P    TLA G C H  R
Sbjct: 520 HASSAPLLAATLAGGLCPHRRR 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,064
Number of Sequences: 438
Number of extensions: 2037
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)