Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0916
(442 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 82 2e-16
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 78 2e-15
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 77 4e-15
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 77 7e-15
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 77 7e-15
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 77 7e-15
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 74 4e-14
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 74 4e-14
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 74 4e-14
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 73 9e-14
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 73 9e-14
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 70 6e-13
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 70 8e-13
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 55 2e-08
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 54 3e-08
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 54 3e-08
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 53 7e-08
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 52 2e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 49 2e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 49 2e-06
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 48 2e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 48 3e-06
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 9e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 46 9e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 46 9e-06
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 46 1e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 45 3e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 45 3e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 45 3e-05
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 45 3e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 3e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 3e-05
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 44 3e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 44 5e-05
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 44 5e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 44 5e-05
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 44 6e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 44 6e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 43 8e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 8e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 43 8e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 43 8e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 1e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 1e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 1e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 1e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 2e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 3e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 41 3e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 41 4e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 7e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 40 0.001
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 39 0.001
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.001
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.001
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.001
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 39 0.002
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 39 0.002
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 39 0.002
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.002
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 39 0.002
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.002
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.002
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.002
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.002
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.003
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.005
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 37 0.005
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 37 0.005
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 37 0.005
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 37 0.005
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 37 0.007
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 37 0.007
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.007
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.009
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.009
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.009
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 36 0.009
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.009
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.009
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.009
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 36 0.012
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.016
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.016
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.016
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.016
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 36 0.016
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 36 0.016
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.021
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 35 0.021
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.021
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 35 0.028
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 35 0.028
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.028
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.028
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.028
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.028
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.028
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 35 0.028
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 35 0.028
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 34 0.037
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.037
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 34 0.037
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 34 0.037
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 34 0.037
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 34 0.037
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 34 0.037
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 34 0.049
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.065
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.065
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 33 0.065
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.065
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.085
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.085
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.085
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.085
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.085
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.085
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.085
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 33 0.085
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.11
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.11
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.11
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.11
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.15
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 32 0.15
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.15
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.15
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 32 0.15
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 32 0.15
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 32 0.15
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.20
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.20
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.26
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.26
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 31 0.34
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.34
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.46
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 30 0.60
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 0.60
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 30 0.80
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 30 0.80
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 30 0.80
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 1.1
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 1.1
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 1.1
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 1.1
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 29 1.1
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 1.1
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 29 1.1
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 1.4
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 1.8
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 1.8
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 1.8
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 1.8
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 2.4
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 28 2.4
At5g24440.1 68418.m02880 RNA-binding protein, putative 28 3.2
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 28 3.2
At1g60095.1 68414.m06771 jacalin lectin family protein contains ... 28 3.2
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 27 4.2
At4g13330.1 68417.m02083 expressed protein 27 4.2
At3g16410.1 68416.m02079 jacalin lectin family protein similar t... 27 5.6
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 27 7.4
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 27 7.4
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 27 7.4
At3g16400.1 68416.m02077 jacalin lectin family protein similar t... 27 7.4
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 27 7.4
At2g33070.1 68415.m04055 jacalin lectin family protein similar t... 27 7.4
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 27 7.4
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 27 7.4
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 27 7.4
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 81.8 bits (193), Expect = 2e-16
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+VYVGNL ++ E+E F +G +R+VWVAR PPG+AF++FEDPRDA D++R LDG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKN 62
Query: 300 CCGTRIRVEMSNG 338
G R+ + G
Sbjct: 63 --GWRVEQSHNRG 73
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 78.2 bits (184), Expect = 2e-15
Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
+YVGNL + K E+E +F KYG I ++ + PPG+AFVEFEDPRDA+D++ G DG
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 297 RCCGTRIRVEMSNG 338
G R+RVE+++G
Sbjct: 69 DFDGCRLRVEIAHG 82
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 77.4 bits (182), Expect = 4e-15
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 299
+VYVGNL ++ E+E F +G IR+VWVAR PPG+AF++FED RDA D++R +DG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKN 62
Query: 300 CCGTRIRVEMSNG 338
G R+ + G
Sbjct: 63 --GWRVEQSHNRG 73
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 76.6 bits (180), Expect = 7e-15
Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 297 RCCGTRIRVEMSNG 338
G R+RVE+++G
Sbjct: 69 DFDGHRLRVELAHG 82
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 76.6 bits (180), Expect = 7e-15
Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 297 RCCGTRIRVEMSNG 338
G R+RVE+++G
Sbjct: 69 DFDGHRLRVELAHG 82
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 76.6 bits (180), Expect = 7e-15
Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 297 RCCGTRIRVEMSNG 338
G R+RVE+++G
Sbjct: 69 DFDGHRLRVELAHG 82
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 74.1 bits (174), Expect = 4e-14
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGL 287
S +YVGNL + ++EIE IF KYG I ++ V PP + FVEFE RDAED+++G
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 288 DGTRCCGTRIRVEMSNG 338
DG G R+RVE+++G
Sbjct: 66 DGYNLDGCRLRVELAHG 82
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 74.1 bits (174), Expect = 4e-14
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 74.1 bits (174), Expect = 4e-14
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 72.9 bits (171), Expect = 9e-14
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 297 RCCGTRIRVEMSNG 338
G +RVE+++G
Sbjct: 69 DFDGHHLRVELAHG 82
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 72.9 bits (171), Expect = 9e-14
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 297 RCCGTRIRVEMSNG 338
G +RVE+++G
Sbjct: 69 DFDGHHLRVELAHG 82
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 70.1 bits (164), Expect = 6e-13
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +3
Query: 87 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 266
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDA 57
Query: 267 EDSVRGLDGTRCCGTRIRVEMSNG 338
+D+ LDG G+RI VE S G
Sbjct: 58 DDARHYLDGRDFDGSRITVEFSRG 81
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 69.7 bits (163), Expect = 8e-13
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +3
Query: 87 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 266
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDA 57
Query: 267 EDSVRGLDGTRCCGTRIRVEMSNG 338
+D+ LDG G+RI VE S G
Sbjct: 58 DDARYYLDGRDFDGSRITVEASRG 81
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 55.2 bits (127), Expect = 2e-08
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
VYVGN + ++E++FSK+G ++ V + G+AFV FED RDAED++R D T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 54.4 bits (125), Expect = 3e-08
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 303 --CGTRIRVE 326
G R+RVE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 54.4 bits (125), Expect = 3e-08
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 303 --CGTRIRVE 326
G R+RVE
Sbjct: 61 GRTGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 53.2 bits (122), Expect = 7e-08
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60
Query: 303 --CGTRIRVE 326
G R+RVE
Sbjct: 61 GRKGRRLRVE 70
Score = 35.1 bits (77), Expect = 0.021
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 147 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 326
N ++EK F YG I NV + RN FAF+++E DA ++ + ++ I VE
Sbjct: 108 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 164
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
V+VGN + ++E++F KYG + V + G+AFV FED RDAED++R LD
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 156 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 326
+++IEK F YG + NV + RN F+FV+FE DA ++ ++ + VE
Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 275
++ +VYVGNL + + + FS YGN+ + V R+ GF FV + +AE +
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 276 VRGLDGTRCCGTRIRVEM 329
V G+DG G R+ V++
Sbjct: 61 VSGMDGKELNGRRVSVKL 78
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +3
Query: 99 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 263
R DL + V NL + + ++ K F ++G ++++++ R+ P GF FV+F DP D
Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89
Query: 264 AEDSVRGLDGTRCCGTRIRV 323
A D+ +DG G + V
Sbjct: 90 AADAKHHMDGYLLLGRELTV 109
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 48.4 bits (110), Expect = 2e-06
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +3
Query: 129 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 308
V NL + S ++E IF YG I+ + N FVEF D R A+ +++ L+ T G
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAG 285
Query: 309 TRIRVEMS 332
RI++E S
Sbjct: 286 KRIKLEHS 293
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 48.0 bits (109), Expect = 3e-06
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 272
D KVYVGNL +K +E +FS+ G + + V+R P GF FV F D E
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 273 SVRGLDGTRCCGTRIRV 323
++ L+ + G +IRV
Sbjct: 234 AIVALNNSLLEGQKIRV 250
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284
+VY+GN+ + ++ K+ ++G + V V + F F + DA V
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 285 LDGTRCCGTRIRVEMS 332
L+G G I+V ++
Sbjct: 137 LNGNTVEGREIKVNIT 152
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 46.4 bits (105), Expect = 9e-06
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
++V NL ++ S E+ IFS YG IR V + ++EF D R A+ +++GL+G
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 303 CGTRIRV 323
G ++++
Sbjct: 357 AGRQLKL 363
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 46.4 bits (105), Expect = 9e-06
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +3
Query: 93 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 257
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 258 RDAEDSVRGLDG 293
R A+D+++ + G
Sbjct: 64 RGADDAIKHMHG 75
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 46.4 bits (105), Expect = 9e-06
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +3
Query: 93 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 257
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 258 RDAEDSVRGLDG 293
R A+D+++ + G
Sbjct: 64 RGADDAIKHMHG 75
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +3
Query: 129 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 308
VGN+ +N YE++ +F ++G+I+ + A GF V + D R A+++ R L G
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRG 280
Query: 309 TRIRVEMS 332
T++ + S
Sbjct: 281 TKLDIRYS 288
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +3
Query: 129 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 308
V NL ++ S E+ ++ YG ++ + + ++EF D R A ++ GL+G G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 309 TRIRV 323
++++
Sbjct: 366 KKLQL 370
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +3
Query: 99 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 263
R+ DL + V NL + + ++ + F ++G ++++++ R+ P GF F++F DP D
Sbjct: 31 RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPAD 90
Query: 264 AEDSVRGLDGTRCCGTRIRV 323
A ++ +DG G + V
Sbjct: 91 AAEAKHQMDGYLLLGRELTV 110
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 278
S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV F D ED+V
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 279 RGLDGTRCCGTRIRVEMSNG 338
+ + GT IRV+ G
Sbjct: 93 KYISGTILDDRPIRVDFDWG 112
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 44.8 bits (101), Expect = 3e-05
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Frame = +3
Query: 69 LSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 233
L I + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GF
Sbjct: 20 LGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGF 79
Query: 234 AFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 326
AF+ +ED R +V L+G G I+V+
Sbjct: 80 AFLAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +3
Query: 135 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 314
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 335
Query: 315 IRVEMS 332
I++E+S
Sbjct: 336 IKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +3
Query: 135 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 314
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 348
Query: 315 IRVEMS 332
I++E+S
Sbjct: 349 IKLELS 354
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 44.4 bits (100), Expect = 3e-05
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = +3
Query: 93 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 260
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+ G FV++
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262
Query: 261 DAEDSVRGLDGT 296
A ++ GL+GT
Sbjct: 263 TAMAAIDGLNGT 274
Score = 33.9 bits (74), Expect = 0.049
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 284
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 285 L 287
L
Sbjct: 181 L 181
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 44.4 bits (100), Expect = 3e-05
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = +3
Query: 93 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 260
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+ G FV++
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262
Query: 261 DAEDSVRGLDGT 296
A ++ GL+GT
Sbjct: 263 TAMAAIDGLNGT 274
Score = 33.9 bits (74), Expect = 0.049
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 284
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 285 L 287
L
Sbjct: 181 L 181
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 44.4 bits (100), Expect = 3e-05
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 117 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
C V V NL ++ + ++ +FS YGNI + + RN P A V+ D AE +V L G
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
Query: 294 TRCCGTRIRVEMS 332
G R+ V S
Sbjct: 305 AMLFGKRLEVNFS 317
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 287
++V L +S+ +I++ F YG I+ V + + P G+AF+E+ RD + + +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 288 DGTRCCGTRIRVEMSNG 338
DG + G R+ V++ G
Sbjct: 200 DGQKIDGRRVLVDVERG 216
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 44.0 bits (99), Expect = 5e-05
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +3
Query: 231 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 338
+AFVEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRG 40
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 44.0 bits (99), Expect = 5e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
VYV NL + E++ F +YG+I + V R+ G F FV FE+P DA +V L+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 291 GTR 299
G +
Sbjct: 287 GKK 289
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 117 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 281
C +YVG+L N + ++ F++ + +V V R+ G+ +V + + DAE +++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 282 GLDGTRCCGTRIRVEMSN 335
L+ + G IR+ S+
Sbjct: 106 KLNYSYLNGKMIRITYSS 123
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 290
+YV NL + ++ ++F+++G I + V R+P G + FV F +A + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 291 GTRCCGTRIRVEMS 332
G G + V ++
Sbjct: 390 GKMVGGKPLYVALA 403
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 43.6 bits (98), Expect = 6e-05
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +3
Query: 231 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 338
+AFVEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRG 40
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 43.6 bits (98), Expect = 6e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284
+VYVGNL +E +FS+ G + V + GF FV ++ ++ +++++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 285 LDGTRCCGTRIRV 323
LDG G +IRV
Sbjct: 265 LDGADLDGRQIRV 277
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 285 LDGTRCCGTRIRV 323
+G G +RV
Sbjct: 152 FNGYELDGRPLRV 164
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.2 bits (97), Expect = 8e-05
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +3
Query: 99 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 263
R +D + ++YVGNL + +E++FS++G + + V + GF FV+ + +
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Query: 264 AEDSVRGLDGTRCCGTRIRVEMS 332
++ LDG G I+V ++
Sbjct: 261 VNVAIAALDGQNLEGRAIKVNVA 283
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 43.2 bits (97), Expect = 8e-05
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPG--FAFVEFEDPRDAEDSVRGLD 290
VYVG L + ++ + ++FS YG++ V + R+ G + FV F + R A+D++ +D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 291 GTRCCGTRIRV 323
G G +RV
Sbjct: 69 GKSIGGRAVRV 79
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 278
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 279 RGLDG 293
++G
Sbjct: 164 ESING 168
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 278
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 279 RGLDG 293
++G
Sbjct: 164 ESING 168
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +3
Query: 84 KMSRYREWDLSC-KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEF 248
K+ + D C K++V N+ A+K E+ ++FS +G I+++ + + G+AFVEF
Sbjct: 657 KVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 716
Query: 249 EDPRDAEDSVRGLDGTRCCGTRIRVEMSN 335
++A ++ + L T G + +E +N
Sbjct: 717 VTKQEALNAKKALASTHFYGRHLVLEWAN 745
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 275
+S +++V L + + ++FS +G I+ + R+ P GF F+ F+ DA +
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 276 VRGLDGTRCCGTRIRVEMS 332
++ LDG G I VE++
Sbjct: 65 LKSLDGKIVDGRLIFVEVA 83
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +3
Query: 99 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 263
R ++ + +VYVGNL + +E++FS++G + V + GF FV D +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
Query: 264 AEDSVRGLDGTRCCGTRIRVEMS 332
+++ LDG G IRV ++
Sbjct: 298 LNEAISALDGQNLEGRAIRVNVA 320
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +3
Query: 129 VGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDG 293
V N+ + E+ + F ++G +R+V++ R+ P GFAFVEF D DA ++ R ++
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNR 110
Query: 294 TRCCGTRIRVEMSN 335
G I V +++
Sbjct: 111 RSFAGREITVVVAS 124
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.3 bits (95), Expect = 1e-04
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVAR---NPPGFAFVEFEDPRDAEDSV 278
S K++VG + + ++ + + FSKYG + + V R GFAFV F +A +++
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 279 RGLDGTRCCGTRIRV 323
+ LDG G RIRV
Sbjct: 93 Q-LDGQDLHGRRIRV 106
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPGFAFVEFEDPRDAEDSVRGLDG 293
+YV NL N + E+ IF KYG IR + + + G AFV +ED DA+++V L G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 287
++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+F DA +++
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 345
Query: 288 DGTRCCGTRIRV 323
G I+V
Sbjct: 346 GQLEIAGRAIKV 357
Score = 35.5 bits (78), Expect = 0.016
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +3
Query: 156 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRI 317
K ++++ SK+G + +++V +N GF ++ FE+ + A + R L G G I
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMI 541
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
V+VG L + + ++ +FS+YG I +V + FV+F + AE+++R L+G +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321
Query: 303 CGTRIRV 323
GT +R+
Sbjct: 322 GGTTVRL 328
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 269
+Y+G + + EIE FS++G ++ V VARN F F++FEDP AE
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 41.1 bits (92), Expect = 3e-04
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Frame = +3
Query: 66 PLSIKT---KMSRYREWDLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-- 218
PL +K ++ R D SC K++VG L N S+ E++ +FS+YG I+++ + R
Sbjct: 85 PLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGS 144
Query: 219 --NPPGFAFVEFEDPRDAEDSVRGLDG 293
G F+++E A ++ L+G
Sbjct: 145 LQTSKGCLFLKYESKEQAVAAMEALNG 171
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG--FAFVEFEDPRDAEDSVRGLDGT 296
++VG L N + E++ IF ++G + +V + PPG FV++ + AE ++ L+GT
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKASAEHALSVLNGT 318
Query: 297 RCCGTRIRV 323
+ G IR+
Sbjct: 319 QLGGQSIRL 327
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.9 bits (89), Expect = 7e-04
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 278
L K++VG L N S+ E++ +FS+YG I+++ + R G F+++E A ++
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157
Query: 279 RGLDG 293
L+G
Sbjct: 158 EALNG 162
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 287
K+YV L +K E+ ++FS+YG I ++++A + G+AFV+F A +++ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 288 DG 293
+G
Sbjct: 268 NG 269
Score = 33.9 bits (74), Expect = 0.049
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 206
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +3
Query: 84 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 251
K R + + +Y+ NL + S+ + + F+++G I ++ +A++ G+AFV F+
Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFD 249
Query: 252 DPRDAEDSVRGLDGTR 299
+P DA + ++GT+
Sbjct: 250 NPEDARRAAETVNGTK 265
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 290
VYV NL + S E+ K+F ++G + + R+ GF FV FE+ DA +V L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 291 G 293
G
Sbjct: 286 G 286
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 287
+YVG+L + ++ + F++ G + +V V R+ G+ +V + P+DA ++ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 288 DGTRCCGTRIRVEMS 332
+ G IRV S
Sbjct: 107 NFMALNGRAIRVMYS 121
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 290
+YV NL + + ++ + F+ +G I + V R+P G + FV F P +A ++ ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 291 G 293
G
Sbjct: 389 G 389
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 290
VYV NL + + +++ F +YG I + V ++ GF FV FE+ DA +V L+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 291 G 293
G
Sbjct: 91 G 91
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVR 281
S +YV NL + S ++++IFS +G + + V R+P G FV F P +A +++
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 190
Query: 282 GLDG 293
L G
Sbjct: 191 QLSG 194
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 278
S K+++G L + + ++ FS +G + V +A + GF FV+F + DA +
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 279 RGLDGTRCCGTRIRVEMS 332
+DG G +R+ +
Sbjct: 100 DAMDGKGLLGRPLRISFA 117
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 117 CK-VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
CK ++VG +G N SK ++E+ FSK+G I + R AF+++ + DA + + ++G
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQA-KSMNG 306
Query: 294 TRCCGTRIRVE 326
G+ +RV+
Sbjct: 307 KPMGGSFLRVD 317
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
S ++VG+L ++ ++ ++F +YG+I + V + GFAF+ + +A + L G
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 294 TRCCGT 311
GT
Sbjct: 76 ANLNGT 81
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 284
K+ + NL A +I+ +FS G + +V++ +N P GFAFV+F +DA ++++
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 285 LDG 293
+G
Sbjct: 392 FNG 394
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 284
K+YV L ++ + F ++GN+ ++ VA P GFAF+ +E +A +++G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 285 LDGTRCCGTRIRVE 326
+ G G I VE
Sbjct: 138 MHGKFLDGRVIFVE 151
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN---PPGFAFVEFEDPRDAEDSVRG 284
+++VG L + ++E+ FS++G+I + + + R+ GF F+ F D R ++S+R
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 285 LDGTRCCGTRI 317
+ G R G R+
Sbjct: 68 MHG-RDFGDRV 77
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 275
+S K++VG L +++ F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 276 VRGLDGTRCCGTRIRVEMS 332
++ +DG G +IRV ++
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 275
+S K++VG L +++ F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 276 VRGLDGTRCCGTRIRVEMS 332
++ +DG G +IRV ++
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
++VG + + ++ + FS++G + +V + G FV+F D + AED++ L+GT
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGT 379
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +3
Query: 84 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 251
+++R+ E +Y+ NL + +++++FS+YGN+ + V NP GF FV +
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 252 DPRDAEDSVRGLDG 293
+P +A ++ ++G
Sbjct: 381 NPEEALRALSEMNG 394
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 290
+Y G+L ++ + +F N+ +V V R+ G+A++ F +P DA ++ L+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 291 GTRCCGTRIRVEMSN 335
T IR+ +SN
Sbjct: 111 YTPLFDRPIRIMLSN 125
Score = 35.5 bits (78), Expect = 0.016
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
VYV NL + E+ K F K+G I + V R+ G F FV FE A +V ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 291 G 293
G
Sbjct: 291 G 291
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 290
VYV NL + E++K F KYG+I + V ++ G F FV F P A +V ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 291 G 293
G
Sbjct: 287 G 287
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Frame = +3
Query: 84 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 251
++SR+ + S +Y+ NL + + +++++FS+YGN+ + V N GF FV +
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376
Query: 252 DPRDAEDSVRGLDG 293
+P +A +++ ++G
Sbjct: 377 NPEEALLAMKEMNG 390
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 290
+YVG+L + ++ + +F++ + N+ V R+ G+A+V F +P DA ++ L+
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 291 GTRCCGTRIRVEMSN 335
IR+ +SN
Sbjct: 107 YAPIRDRPIRIMLSN 121
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 117 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 281
C++YV N+ + ++ +F +G + +V V+RNP G +V A+ ++
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 282 GLDGTRCCGTRIRVEMS 332
LDGT G +RV S
Sbjct: 168 SLDGTEVGGREMRVRYS 184
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRG 284
KVYVGNL + FSK+G I + V + FAF+ F + D+
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 285 LDGTRCCGTRIRV 323
+GT+ G RI V
Sbjct: 272 FNGTQYEGRRIIV 284
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 278
S K+++G + + + + + F+KYG + + V + GF FV F A ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 279 RGLDGTRCCGTRIRVEMSN 335
+ LDG G ++V +N
Sbjct: 99 QALDGRDLHGRVVKVNYAN 117
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 114 SCK-VYVGNLGTNASKYEIEKIFSKYGNIR-NVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
+C+ VYVGN+ T ++ +++IF+ G + + + ++ + FV + D R A ++ L
Sbjct: 57 TCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSL 116
Query: 288 DGTRCCGTRIRV 323
+G G I+V
Sbjct: 117 NGRHLFGQPIKV 128
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 123 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 287
++VG+L T+A+ Y+ +FS + R +W + GF FV F + +DA+ ++ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 288 DGTRCCGTRIR 320
+G +IR
Sbjct: 206 NGKWLSSRQIR 216
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 266
VYVGNL ++ ++ + F G I V V R+ GF FV + +A
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-KGFGFVRYNTHPEA 315
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
++V NL + ++ +F +Y + V + PG AFVEF D + +++GL G
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 284
+++VG+L AS+ +++K+F G + V + +NP G AF+ F A+ +V+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 285 LDGTRCCGTRIRVEMS 332
L G + V S
Sbjct: 275 LKSPMINGKKCGVTAS 290
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 243 EFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 338
EF DPRDA+D+ LDG G+RI VE S G
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVEFSRG 51
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 263
D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE+E ++
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKE 117
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 272
D+ + +VG L +E F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 273 SVRGLDGTRCCGTRIRV 323
++ G++G G I V
Sbjct: 65 AIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 272
D+ + +VG L +E F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 273 SVRGLDGTRCCGTRIRV 323
++ G++G G I V
Sbjct: 65 AIEGMNGQDLDGRSITV 81
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 36.3 bits (80), Expect = 0.009
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 275
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 276 VRGLDGTRCCGTRIRVEMSN 335
+ +DG G IRV +N
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 36.3 bits (80), Expect = 0.009
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 275
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 276 VRGLDGTRCCGTRIRVEMSN 335
+ +DG G IRV +N
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 281
S VYV NL + + +FS+YG + +V V R+ GF FV F +P +A+ ++
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 282 GLDG 293
L G
Sbjct: 261 SLCG 264
Score = 32.7 bits (71), Expect = 0.11
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---PPGFAFVEFEDPRDAEDSVRGLDG 293
+YV NL ++ + +E++F +G+I + V GF FV+F+ + A + L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 294 TRCCGTRIRV 323
+ G ++ V
Sbjct: 174 SMVYGKKLFV 183
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 290
+YV NL + ++ + +IF YG I + V GF FV F + +++ + R L+
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 291 GTRCCGTRIRVEMS 332
G G I V ++
Sbjct: 366 GFLVDGKPIVVRVA 379
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3
Query: 228 GFAFVEFEDPRDAEDSVRGLDGT 296
G+AFV FED RDAED++R D T
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNT 32
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 36.3 bits (80), Expect = 0.009
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 275
++ K+Y GNL N + +I + N V V N GFAFV + D
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 276 VRGLDGTRCCGTRIRVEMSN 335
+ LDGT G ++V ++
Sbjct: 143 IDNLDGTEYLGRALKVNFAD 162
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 284
K++VGNL + + F + G++ V + G+ FV + + E ++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 285 LDGTRCCGTRIRVEMSNG 338
LDG G IRV ++ G
Sbjct: 238 LDGFELEGRAIRVNLAQG 255
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 278
S ++V +L N ++ +++IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 279 RGLDGTRCCGTRIR 320
+DG + G ++
Sbjct: 157 LYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 278
S ++V +L N ++ +++IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 279 RGLDGTRCCGTRIR 320
+DG + G ++
Sbjct: 157 LYMDGAQIDGKVVK 170
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 35.9 bits (79), Expect = 0.012
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 293
+++ NLG N ++ E++++ S+Y + + AR AF +FE+ A D++ L G
Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 282
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 35.5 bits (78), Expect = 0.016
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 284
K+YVGNL N S+ ++ +IF +G + V + +P GF F++F ++ +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 285 LDG-TRCCGTRIRV 323
L+G G I+V
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 29.9 bits (64), Expect = 0.80
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 180 SKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 287
SKYG + +++V +N GF ++ F+ A + R +
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 501
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284
++YVGNL +E +F++ G + V + GF FV ++ + ++
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 285 LDGTRCCGTRIRV 323
L+G G +IRV
Sbjct: 310 LNGADLDGRQIRV 322
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 284
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 285 LDGTRCCGTRIRV 323
+G G +RV
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 284
++YVGNL +E +F++ G + V + GF FV ++ + ++
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 285 LDGTRCCGTRIRV 323
L+G G +IRV
Sbjct: 318 LNGADLDGRQIRV 330
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 284
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 285 LDGTRCCGTRIRV 323
+G G +RV
Sbjct: 160 FNGYEFEGRPLRV 172
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.5 bits (78), Expect = 0.016
Identities = 17/62 (27%), Positives = 39/62 (62%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
++ ++VG L ++ + ++++ FS++G I +V + G FV+F + +AE+++ L+
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 362
Query: 291 GT 296
GT
Sbjct: 363 GT 364
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 35.5 bits (78), Expect = 0.016
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
+++ NL + ++ +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 35.5 bits (78), Expect = 0.016
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
+++ NL + ++ +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 35.1 bits (77), Expect = 0.021
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 147 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 326
N ++EK F YG I NV + RN FAF+++E DA ++ + ++ I VE
Sbjct: 67 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 123
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 249 EDPRDAEDSVRGLDGTRC--CGTRIRVE 326
ED RDAED++R LD G R+RVE
Sbjct: 2 EDERDAEDAIRALDRFEFGRKGRRLRVE 29
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 35.1 bits (77), Expect = 0.021
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 287
+YV NL + + +I +FS +G + V V R G AFV + DA + R +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 288 DGTRCCGTRIRVEMS 332
D G ++ V ++
Sbjct: 119 DAKILNGRKLTVSIA 133
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.1 bits (77), Expect = 0.021
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 296
++VG L + ++ ++ + FS +G + +V + G FV+F + + AE+++ L+GT
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK-GCGFVQFANRQSAEEAIGNLNGT 385
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 135 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 299
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 300 CCGTRIRVEMS 332
G I V+ +
Sbjct: 82 VDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 135 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 299
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 300 CCGTRIRVEMS 332
G I V+ +
Sbjct: 82 VDGREITVQFA 92
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.028
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 129 VGNLGTNA--SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
V N G +A + + ++F+ + + + P GF F+ FE DA+ +++ L+G
Sbjct: 73 VSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 303 CGTRIRVE 326
G I VE
Sbjct: 133 NGRLIFVE 140
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.7 bits (76), Expect = 0.028
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 278
+C VY+GN+ S + I + G + ++ + R+ P GFAF E+E A+ +V
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 279 RGLDG 293
+ G
Sbjct: 66 KLFSG 70
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARN---PPGFAFVEFEDPRDAEDSVRG 284
KVY GNLG N + ++ F + V RN GF F+ FE + + ++
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 285 LDGTRCCGTRIRVEMSN 335
++G G +R+ +++
Sbjct: 280 MNGVEVEGRALRLNLAS 296
Score = 31.1 bits (67), Expect = 0.34
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDSVRG 284
++YVGNL + E+ +IF + G + +V V GF FV +A+++++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 285 LDGTRCCGTRIRV 323
+ ++ G ++V
Sbjct: 177 FNSSQIGGRTVKV 189
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 257
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 31.5 bits (68), Expect = 0.26
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 251
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 257
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 31.5 bits (68), Expect = 0.26
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 251
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 34.7 bits (76), Expect = 0.028
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
+++ NL + ++ +F +Y + + + PG AFVE+ED A +++ L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 34.7 bits (76), Expect = 0.028
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVR 281
K++VG + S+ +++ FS+YG + VA+ P GF FV F + D ++R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 34.3 bits (75), Expect = 0.037
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +3
Query: 66 PLSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGF 233
P SI + E D V+VGN+ + E+++ F G + V + + P GF
Sbjct: 76 PASIAANQAGKEEVDAR-SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGF 134
Query: 234 AFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
A+VEF + +++++ L+ + G +++V
Sbjct: 135 AYVEFVEVEAVQEALQ-LNESELHGRQLKV 163
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.3 bits (75), Expect = 0.037
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 281
S +YVGN+ + E+++ F G + V + + P GFA+VEF + ++S+
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI 161
Query: 282 GLDGTRCCGTRIRV 323
L+ + G +I+V
Sbjct: 162 -LNESELHGRQIKV 174
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 34.3 bits (75), Expect = 0.037
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 281
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED E++++
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 34.3 bits (75), Expect = 0.037
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 281
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED E++++
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 34.3 bits (75), Expect = 0.037
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 135 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 314
NL S + +IF YG I+ + FVEF D RDA + ++G G +
Sbjct: 219 NLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQ 278
Query: 315 IRVEMS 332
+ +E S
Sbjct: 279 VVIEFS 284
Score = 30.3 bits (65), Expect = 0.60
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 186 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 293
YG++R V + R G V F D RDA+ +VR + G
Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCG 164
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 34.3 bits (75), Expect = 0.037
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 287
VYVG L S+ + ++F + G + NV+V ++ + F+E+ DA+ +++ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 288 DGTRCCGTRIRVEMSN 335
+ + G IRV ++
Sbjct: 87 NMIKLHGKPIRVNKAS 102
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.3 bits (75), Expect = 0.037
Identities = 16/62 (25%), Positives = 39/62 (62%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 290
++ ++VG L ++ + ++++ F+++G I +V + G FV+F + +AE+++ L+
Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 360
Query: 291 GT 296
GT
Sbjct: 361 GT 362
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.9 bits (74), Expect = 0.049
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 287
+++G+L + + FS+ G + +V V RN P G+ F+EF AE +++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 288 DGTRCCGTRIRVEMS 332
+GT+ GT + ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.065
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 290
+Y+ NL S+ + +FS +G + +A++ GFAF+EFE A ++ +D
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 291 GTRCCGTRI 317
G R G +I
Sbjct: 79 G-RLIGQKI 86
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.5 bits (73), Expect = 0.065
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 257
K+++G + + + + + FS +G + V V R P GF FV F DP
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 33.5 bits (73), Expect = 0.065
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 287
+YV L ++ ++E F+K G + +V + +P GF F+ + DA +R L
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 288 DGTRCCGTRIRVE 326
D + G I VE
Sbjct: 107 DHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.5 bits (73), Expect = 0.065
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 287
+YV L ++ ++E F+K G + +V + +P GF F+ + DA +R L
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 288 DGTRCCGTRIRVE 326
D + G I VE
Sbjct: 137 DHSVLQGRVITVE 149
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.1 bits (72), Expect = 0.085
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 269
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.1 bits (72), Expect = 0.085
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 269
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.085
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 254
D + K++VG L + E K F KYG I + + ++ P GF FV + D
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.1 bits (72), Expect = 0.085
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +3
Query: 66 PLSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGF 233
P S+ E D VYVGN+ + E++ F G + V + + P GF
Sbjct: 73 PASMAANQEGKEEVDAR-SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGF 131
Query: 234 AFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
A+VEF + +++++ L+ + G +++V
Sbjct: 132 AYVEFVEVEAVQEALQ-LNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.1 bits (72), Expect = 0.085
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +3
Query: 66 PLSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGF 233
P S+ E D VYVGN+ + E++ F G + V + + P GF
Sbjct: 73 PASMAANQEGKEEVDAR-SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGF 131
Query: 234 AFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 323
A+VEF + +++++ L+ + G +++V
Sbjct: 132 AYVEFVEVEAVQEALQ-LNESELHGRQLKV 160
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.1 bits (72), Expect = 0.085
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-GFAFVEFEDPRDAEDSVRGLDGTR 299
++VGNL + E+ F ++G + ++ A P +AFV F DA ++ L G
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL--AFQPGRSYAFVNFNHDEDAFAAIESLQGFP 82
Query: 300 CCGTRIRVEMS 332
G +R+E +
Sbjct: 83 LSGNPLRIEFA 93
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 33.1 bits (72), Expect = 0.085
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 135 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 314
NL S + IF YG ++ V FVEF D RDA ++R ++G G
Sbjct: 189 NLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKP 248
Query: 315 IRVEMS 332
+ ++ S
Sbjct: 249 MVIQFS 254
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 33.1 bits (72), Expect = 0.085
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 114 SCK-VYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEFEDPRDAEDSVRGL 287
+C+ VYVGN+ ++ ++++F+ G + + + + + FV + D R A ++ L
Sbjct: 52 TCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSL 111
Query: 288 DGTRCCGTRIRV 323
+G G I+V
Sbjct: 112 NGRHLFGQPIKV 123
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEF 248
VYVGNL S+ ++ + F G I V V R+ GF FV +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRY 304
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKY---GNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 287
++VG+L + + FS Y + R +W + GF FV F + +DA+ ++ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 288 DGTRCCGTRIR 320
G +IR
Sbjct: 201 TGKWLGSRQIR 211
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 272
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 273 SVRGLDGTRCCGTRIRV 323
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 272
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 273 SVRGLDGTRCCGTRIRV 323
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 272
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 273 SVRGLDGTRCCGTRIRV 323
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 269
K+++G + + + +++ F KYG++ + R+ GF F+ F DP AE
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 287
+YV L T + ++E F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 288 D 290
+
Sbjct: 134 N 134
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 287
+YV L T + ++E F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 288 D 290
+
Sbjct: 133 N 133
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 257
K++VG + + ++ + F+ YG + V R+ P GF FV F DP
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 284
+VY+GNL + ++ +I K+FS I +V + +N G+A V+F+D +++
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK- 320
Query: 285 LDGTRCCGTRIRV 323
LD CG +++
Sbjct: 321 LDQQVICGRPVKI 333
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDG 293
+++GNLG N ++ E+ + S + + + R F+EFED A + L G
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQG 292
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 287
V V NL + + ++ ++F +G + V+VA + GF FV F DA+ ++ L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 288 DGTRCCGTRIRVE 326
+G +RVE
Sbjct: 275 NGYGYDNLILRVE 287
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN--PPGFAFVEFEDPRDAEDSVRGLD 290
+YV NL + ++E++FS++G I + V V N G FVEF +A ++ ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 291 G 293
G
Sbjct: 285 G 285
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.9 bits (69), Expect = 0.20
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDA----ED 272
KV+VG L + K + F KYG+I + R G+ FV F+D + A ED
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 273 SVRGLDGTR 299
S ++G R
Sbjct: 78 STPIINGRR 86
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 31.9 bits (69), Expect = 0.20
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 123 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 287
++VG+L T+A+ ++ F+ + R +W + GF FV F + +DA+ ++ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 288 DGTRCCGTRIR 320
+G +IR
Sbjct: 210 NGKWVSSRQIR 220
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 266
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 319
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 272
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 273 SVRGLDGT 296
++ ++G+
Sbjct: 63 AIEEMNGS 70
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.5 bits (68), Expect = 0.26
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 99 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 269
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 135 REDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAH 194
Query: 270 DSVRGLDGT 296
+++ L GT
Sbjct: 195 EAL-SLGGT 202
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3
Query: 108 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAED 272
D + ++G L S + F KYG++ V + GF F+ F++ + ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 273 SVRGLDGTRCCGTRIRVE 326
++ ++G G I V+
Sbjct: 64 AIAAMNGMDLDGRTITVD 81
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 31.1 bits (67), Expect = 0.34
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 99 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 269
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 122 REDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGAR 181
Query: 270 DSVRGLDGT 296
S L GT
Sbjct: 182 -SALSLGGT 189
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 30.7 bits (66), Expect = 0.46
Identities = 15/67 (22%), Positives = 38/67 (56%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 302
++VG + + ++ +++ +F ++G + +V + FV++ + AE ++ L+GT+
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR-CGFVQYANRACAEQALSVLNGTQL 338
Query: 303 CGTRIRV 323
G IR+
Sbjct: 339 GGQSIRL 345
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 30.3 bits (65), Expect = 0.60
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRDAEDSVRGL 287
K+Y+ NL S +I+++FS+ G+++ + + G A V F DA +V+
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 288 DGTRCCGTRIRVEM 329
+ + G +++E+
Sbjct: 169 NNVQLDGKLMKIEI 182
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.3 bits (65), Expect = 0.60
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 278
S ++V + ++++ + + FS+YG + V V + P GFA+V F +AE ++
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 279 RGLD 290
L+
Sbjct: 80 LELN 83
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.9 bits (64), Expect = 0.80
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 269
K+++G + + ++ +++ FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.9 bits (64), Expect = 0.80
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 269
K+++G + + ++ +++ FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 29.9 bits (64), Expect = 0.80
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 287
++VG L + EIE + S+YG ++ + V+ G+ VEF D A G+
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 288 DG 293
+G
Sbjct: 264 NG 265
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEF 248
+++VG LG + + ++ KIFS G + V +V FA+++F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 102 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 257
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 102 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 257
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 102 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 257
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 183 KYGNIRNVWVARN-PPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 338
K+G +V V + P G V F+D RDA+ + ++G +I + +G
Sbjct: 439 KHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASLDDG 491
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-PPG----FAFVEFEDPRDAEDSVRGL 287
++V L ++ IFS++G + + V R+ G +AF+EFE+ E + +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 288 DGTRCCGTRIRVEMS 332
D RI V+ S
Sbjct: 305 DNALIDDRRIHVDFS 319
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 266
KV+VG L + + F +YG+I V + G+ FV F DP A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 224
V+VGNL K I K FSK+G + +V + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +3
Query: 111 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDS 275
++ K+++G L ++ + + FSK G + V+ GF FV F +A+ +
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 276 VRGLDGTRCCGTRIRVE 326
+ +G + G I V+
Sbjct: 92 LMEFNGQQLNGRTIFVD 108
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 287
V V NL + ++ ++F +G + VA + GF FV F DA+ ++ L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 288 DGTRCCGTRIRVEMS 332
+G +RVE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 266
KV+VG L + + F +YG I V + G+ FV F DP A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRG 284
+++VG L ++ +I ++ +G +R + + N G+AF ++DP + +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 285 LDGTR 299
L+G +
Sbjct: 436 LNGIK 440
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = +3
Query: 123 VYVGNLG---TNASKYEIEKIF----SKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDS 275
++VG+L T+A+ ++ F S Y + R +W + GF FV F + +DA+ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 276 VRGLDGTRCCGTRIR 320
+ ++G +IR
Sbjct: 210 INEMNGKWVSSRQIR 224
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 266
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 323
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 287
+YVG L ++ + F +G+I++V + F FV F + DA ++ +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 288 DGTRCCGTRIRV 323
DG G + V
Sbjct: 75 DGAELYGRVLTV 86
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAEDSVRGLDG 293
VYV ++ ++ ++ +F G + + + + FAF+EF D A ++R G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALR-KSG 197
Query: 294 TRCCGTRIRVEMS 332
T IRV MS
Sbjct: 198 TMFGSHPIRVFMS 210
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -2
Query: 303 SSVFHQVHEQSLQHHGGLRILQMQIRADFELPIRYVCYRI 184
+ H +H+ S + HG L+ + + DFE + C +
Sbjct: 494 AQALHYIHQSSAKFHGNLKSTNILLGHDFEACVTDYCLSV 533
>At1g60095.1 68414.m06771 jacalin lectin family protein contains
similarity to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767;
Length = 531
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 186 YGNIRNVWVARNPPGFAFVEFEDPRDAE 269
+ IRN+++ N G AFV+F +D++
Sbjct: 404 FDGIRNIYIGHNKMGIAFVKFLYDKDSQ 431
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +3
Query: 114 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 278
S ++V L + + F+++G + + V + GF FV + D+ +
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114
Query: 279 RGLDG 293
G+DG
Sbjct: 115 AGMDG 119
>At4g13330.1 68417.m02083 expressed protein
Length = 428
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 327 FRHESWCHSSVFHQVHEQSLQHHGGLRILQMQIRAD 220
F H W SSVF + ++L H G ++ + AD
Sbjct: 295 FPHSLWDSSSVFMKALSKTLHHEHGTLVVNLHSDAD 330
>At3g16410.1 68416.m02079 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 619
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 186 YGNIRNVWVARNPPGFAFVEFE 251
Y N+R V+V + G AFV+FE
Sbjct: 170 YDNVRKVYVGQAQYGIAFVKFE 191
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNI 197
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNI 197
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 120 KVYVGNLGTNASKYEIEKIFSKYGNI 197
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g16400.1 68416.m02077 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 470
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 186 YGNIRNVWVARNPPGFAFVEFE 251
Y N+R V+V + G AFV+FE
Sbjct: 21 YENVRKVYVGQAQYGIAFVKFE 42
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPG----FAFVEFEDPRDAEDSVR 281
+ V +L NA+ +E +F ++G I+ + NP +AFVEFE+ A+ +++
Sbjct: 552 IRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAIQ 609
>At2g33070.1 68415.m04055 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 471
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 186 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSV 278
Y +R V+V + G AFV+FE +++ V
Sbjct: 21 YDGVRKVYVGQGEDGIAFVKFEYVNGSQEVV 51
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 126 YVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGLD 290
+V L + + ++ IFSK+GN+ + + F FV FE+ + D++ +D
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 287
+ V + + +I F +G I+N+ + + G+A +E+E +A+ ++ +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 288 DGTRCCGTRIRVE 326
+G + V+
Sbjct: 157 NGAELLTQNVSVD 169
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 123 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFED 254
V+VG L + + ++ +FS+YG I +V + FV+F +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSE 305
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,760,883
Number of Sequences: 28952
Number of extensions: 164755
Number of successful extensions: 760
Number of sequences better than 10.0: 178
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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