Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0914
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    26   0.33 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.57 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.1  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +1

Query: 373 RDCHQ---TGYSPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEE 543
           R  HQ   TGY        CP   ++ E+C S        R     K    RK R +Y  
Sbjct: 77  RPMHQNSYTGYHLGSYAANCPPSPKDDEKCLS------LERPSGGGKGKKMRKPRTIYSS 130

Query: 544 LRLLQ 558
           L+L Q
Sbjct: 131 LQLQQ 135


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 494 PERRSQREGKVERFMKNFVYYK 559
           PE+R    G  E  M+NF YY+
Sbjct: 100 PEKRLTLNGIYEYIMRNFPYYR 121


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 109 FSKGPAATLRRSSGVKARPKCWS 41
           +S GP ATL+ S+       CWS
Sbjct: 20  WSSGPNATLQSSACTDDLSSCWS 42


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 445 ERCPSHRPVPFARRSR 492
           ERC   RP+P  +++R
Sbjct: 183 ERCDPDRPLPLDQKAR 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,479
Number of Sequences: 336
Number of extensions: 2702
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)