Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0914
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 39 0.004
03_02_0484 + 8805053-8805538 39 0.004
03_02_0483 - 8804021-8804485 39 0.004
04_04_0017 + 22176759-22177406 37 0.013
03_02_0478 + 8775892-8776377 37 0.013
02_02_0077 - 6586638-6587165 37 0.013
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.039
02_05_1020 - 33561454-33561568,33561839-33562070,33563286-335633... 35 0.052
01_01_0229 - 1943473-1943922 35 0.052
01_01_0231 + 1951047-1951499 35 0.069
11_02_0041 - 7669692-7670312 34 0.091
02_05_0494 + 29486960-29487454 33 0.16
07_03_1697 - 28795521-28797328,28797430-28797550 33 0.28
01_01_0227 + 1933247-1933699 33 0.28
01_01_0599 - 4448290-4448790 31 0.64
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 1.1
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 31 1.1
01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440... 31 1.1
09_04_0377 + 17086775-17088310 30 1.5
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 30 1.5
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 30 1.5
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 30 2.0
06_01_0613 + 4439829-4439917,4440650-4440738,4441219-4441453,444... 30 2.0
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 29 2.6
05_06_0034 + 25082875-25084113 29 4.5
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 29 4.5
01_01_0228 + 1940149-1940649 29 4.5
06_03_0190 - 17708513-17708548,17708897-17709295 28 6.0
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 28 6.0
03_06_0199 + 32310272-32311432 28 6.0
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 7.9
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 425
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 425
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 425
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>04_04_0017 + 22176759-22177406
Length = 215
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 318 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTG---PVRKEI 488
+F R+ LP+ A +++ + L + GVLT+ + PD +KG R V IA G +K I
Sbjct: 141 RFWRQLRLPDNADLDSIAASLDN-GVLTVRFRKLAPDQIKGPRVVGIASAGGDDGGKKSI 199
Query: 489 KDQSEEANEKEK 524
E N++ K
Sbjct: 200 GGAGEGQNQQAK 211
>03_02_0478 + 8775892-8776377
Length = 161
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 419
S +F+RR+ LP+ A PE +++ + +GVLT+T P++
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKE 147
>02_02_0077 - 6586638-6587165
Length = 175
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 318 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTG 470
+F+RR+ LPE A + V + DGVLT+T +K P K R V + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 416
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>02_05_1020 -
33561454-33561568,33561839-33562070,33563286-33563374,
33563856-33563944
Length = 174
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 GTS*WKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCPTPS 435
G + W+ R +S G +C + + R+C L G+ + S
Sbjct: 60 GKNGWRVELSRNSSSRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGKRRSRS 119
Query: 436 RERERCPSHRPVP-FARRSRTRAKKPTRRKS 525
R R R P +R P + RRS + + RR+S
Sbjct: 120 RSRSRSPQYRKSPTYGRRSYSPRDRSPRRRS 150
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 416
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.069
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 416
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = +3
Query: 318 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQ 497
+F RR+ +P GA V +RL DGVLT+T P KVP +G +A G +++ +
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVP-KVP-GHRGREPRVVAIDGAGAGDMEAE 197
Query: 498 SEEANEKE 521
+A++ E
Sbjct: 198 VVKASKAE 205
>02_05_0494 + 29486960-29487454
Length = 164
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 315 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 419
R V ++ LPE AA + +R++ DGVLT+T P++
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 32.7 bits (71), Expect = 0.28
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = +1
Query: 337 RCLKARRLRLWNRD---CHQTGYSPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKK 507
R L +RR R D CH + PS G CP P ++ C S R R RT+
Sbjct: 339 RGLPSRRYRRCRADHPCCHDARHGPSCHHGCCP-PHHGKQACTSCRG-QHCCRPRTQESP 396
Query: 508 PTRRKSRKVYEELRLLQNGGATRD*FQILYRCAIRVICKLC 630
RR + +E +++ R+ + + + A +IC C
Sbjct: 397 APRRPAAAAAKE--VVKRRAPPRNHCRPVLKGAPFIICSSC 435
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 419
S +F RR+ LP GA + V + + +GVLT+T P++
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>01_01_0599 - 4448290-4448790
Length = 166
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 318 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
+F+R++ LP+ A + + S + DGVLT+T + P K + + +
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +1
Query: 412 RGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEELRLLQNGG 567
R R +P R RER RP P R SR+R+ P + R V LR ++GG
Sbjct: 478 RSRSRSPLRYRERGGYRRPSP--RHSRSRS--PAEHQRRDVRNRLRSGRDGG 525
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 424 PTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSR 528
P P R+R P+ P P R SR+R++ P R +SR
Sbjct: 45 PLPPRKRRLSPT--PSPTRRSSRSRSRSPRRGRSR 77
>01_01_0591 -
4401847-4402063,4402860-4403002,4403339-4403447,
4403546-4404707,4405754-4405865,4405980-4406015
Length = 592
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 403 SLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPT 513
+LRR R P SR R +C SH P P +R T A T
Sbjct: 148 ALRRARPPASSRPRYKCYSHPPSP-SRGDATAAAAAT 183
>09_04_0377 + 17086775-17088310
Length = 511
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 427 TPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRK 531
+PS R R PS P P RR+R R + P+ +SR+
Sbjct: 23 SPSPRRRRSPSRSPSP--RRNRRRDRSPSPYRSRR 55
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +1
Query: 319 SSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCPTPSRERERCPSHRPVPFAR 483
SS +V R + RR +RD + G S S RR R +P+R R +HR PF R
Sbjct: 328 SSRNVDRQGRERR----DRDSDRHGRS-SARRSRSRSPNRGRTEGENHRSSPFGR 377
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 367 WNRDCHQTGYSPSLRRGRCPTPSR-ERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEE 543
W C++ G + R +P RER S P P R R+R+ +R +SR Y
Sbjct: 122 WKNKCYRCGERGHIERNCQNSPRNLRRERSYSCSPSPRRGRGRSRSYSRSRSRSRS-YSR 180
Query: 544 LRLLQNGGATR 576
R G+ R
Sbjct: 181 SRSRSLSGSPR 191
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 283 KRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCPTPSRERERCPSH 462
K + S G + + +C + + R C S R + SRE + P H
Sbjct: 962 KNNQISEGSTRKEHENEGQCSEMSKKTRTLRCCANKSESDDCTR-KIDLSSREGDSQPQH 1020
Query: 463 RPVPFARR-SRTRAKKPTRRKSRKV 534
+ PF+RR S+T+ K P ++ V
Sbjct: 1021 KAGPFSRRVSKTKRKHPPTHLNKHV 1045
>06_01_0613 +
4439829-4439917,4440650-4440738,4441219-4441453,
4441768-4441771,4441829-4441930
Length = 172
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 GTS*WKASTKRRKTS-TGIFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCPTP 432
G + W+ R +S G S ++C + + R+C S L GR +
Sbjct: 60 GKNGWRVELSRNASSGRGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGRRRSR 119
Query: 433 SRERERCPSHRPVP-FARRSRTRAKK 507
SR R R P +R P + RR KK
Sbjct: 120 SRSRSRSPRYRRSPSYGRRIYIYTKK 145
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +1
Query: 280 TKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCPTPSRERERCPS 459
++RR+ + G TR + RR + C +G RR R SR R+R S
Sbjct: 12 SRRRRRDSDDESGERDLDTR--RHRRRSPSSESCSSSGDDDRSRRHRHDESSRRRQRDQS 69
Query: 460 HRPVPFARRSRTRAKKPTRRK 522
HR R R + P RRK
Sbjct: 70 HRRDRGGHDER-RRRSPQRRK 89
>05_06_0034 + 25082875-25084113
Length = 412
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 469 PVCAMGTFLSPLTASGTFLGAVMVSTPSDDSRDSTVSGAAP 347
P+ A+G LSP S + L A + S+PS S S+ S P
Sbjct: 129 PIQALGQILSPAN-SASVLAASVTSSPSSSSSSSSSSPPLP 168
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 418 RCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSR 528
R P+P ER S PV R R+ +K P+R SR
Sbjct: 323 RSPSPVDERSISRSRTPVSSPSRGRSVSKSPSRSLSR 359
>01_01_0228 + 1940149-1940649
Length = 166
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 321 FVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGER 446
+V R LP G E V + VL IT R V KG+R
Sbjct: 52 YVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQR 93
>06_03_0190 - 17708513-17708548,17708897-17709295
Length = 144
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +1
Query: 391 GYSPSLRRGRCPTPSR-ERER---C-PSHRPVPFARRSRTRAKKPTRRKSRK 531
G+ RR R P PSR R R C + RP ARRSR A++ RKS K
Sbjct: 6 GWRGHRRRSRGPPPSRTSRSRLRPCLATTRPWWCARRSRKEAEERPNRKSCK 57
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/60 (36%), Positives = 24/60 (40%)
Frame = +1
Query: 391 GYSPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEELRLLQNGGA 570
G PS RR RC R R R RP P R R R RR+ V R + GA
Sbjct: 45 GGIPSRRRRRCAWIRRWRRRGGWFRPPP-VRIRRGRPSSDPRRRGGGVRRPWRSREEAGA 103
>03_06_0199 + 32310272-32311432
Length = 386
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 436 RERERCPSHR----PVPFARRSRT-RAKKPTRRKSRKVYEELRLLQNGGATR 576
R R RCP HR P P RR R ++P +R+ +V ELR+ + R
Sbjct: 115 RGRVRCPCHRRFAHPRPARRRLRQGLLRRPRQRRLLRVRGELRVRSHQAGRR 166
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 427 TPSRERERCPSHRPVPFARRSRTRAKKPTR-RKSRK 531
T + R S P P ARRS++R++ P + R+SR+
Sbjct: 505 TVEEKDARGKSRSPSPSARRSKSRSRSPIKYRRSRR 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,134
Number of Sequences: 37544
Number of extensions: 344126
Number of successful extensions: 1184
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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