Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0914
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 61 7e-10
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 53 2e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 4e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 4e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 50 1e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 50 1e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 49 4e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 36 0.023
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 32 0.37
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 32 0.49
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.49
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 32 0.49
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.7
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 29 3.5
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 29 3.5
SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9) 29 4.6
SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09) 29 4.6
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 29 4.6
SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_26991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 28 6.1
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 61.3 bits (142), Expect = 7e-10
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 177 VDKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 353
+D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 1 MDADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGV 59
Query: 354 APETVESRLSSDGVLTITAPRKVPDAVKGERKVP 455
++ +R++ DG+L + A +K P A E K P
Sbjct: 60 DESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3
Query: 180 DKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 359
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 360 ETVESRLSSDGVLTITAPRK 419
+T+ RL DGVL I A ++
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +3
Query: 159 VGSSIKVDKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 335
+ ++ +++ DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSY 87
Query: 336 ALPEGAAPETVESRLSSDGVLTITAPRKVP 425
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.9 bits (59), Expect(2) = 0.067
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 138 LAAAARDVGSSIKVDKDKFQVNLDVQHFAPE 230
+ A+ G K+D +F V LDV F+P+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.8 bits (54), Expect(2) = 0.067
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 327 RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
R + LP+ +++ SRL DG L I A +++ ER+V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEA-KRILHPTPHERQVNI 203
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 180 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 356
+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVE 61
Query: 357 PETVESRLSSDGVLTITAPRKVPDAVKGERK 449
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 156 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 335
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 336 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 180 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 356
+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVE 61
Query: 357 PETVESRLSSDGVLTITAPRKVPDAVKGERK 449
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 156 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 335
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 336 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +3
Query: 180 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 356
+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 61
Query: 357 PETVESRLSSDGVLTITAPRKVPDAVKGERK 449
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 186 DKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 362
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 363 TVESRLSSDGVLTITAPRKVPDAVKGERK 449
V++R+S+ G L I A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 156 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 335
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 336 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 156 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 335
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 336 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +3
Query: 180 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 356
+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 61
Query: 357 PETVESRLSSDGVLTITAPRKVPDAVKGERK 449
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 156 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 335
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 336 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = +3
Query: 204 LDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 383
LDV+ + PEEIS K +G + V + ++F R + LPEG PE V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGIDPENVTSRIS 70
Query: 384 SDGVLTITAPRKVP 425
+ G L I A + +P
Sbjct: 71 NHGHLHIEARKALP 84
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +3
Query: 174 KVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 353
K +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 354 APETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
+++ +RL +G L A + V A+ R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +3
Query: 180 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 356
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 357 PETVESRLSSDGVLTITAPRKV--PDAVKGERK 449
V++R+S+ G L I A + + PD K E K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKKESK 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/99 (24%), Positives = 46/99 (46%)
Frame = +3
Query: 162 GSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 341
G+ + DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 342 PEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 458
P +++ +RL +G L A ++ A+ R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 147 AARDVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 326
A ++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 327 RRYALPE 347
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 394 YSPSLRRGRCPTPS---RERERCPSHRPVPFARRSRTRAKKPTR 516
YSPS RR PTPS R R + PS P RRS + + P R
Sbjct: 903 YSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMR 946
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 397 SPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRK 522
SP RR R P+P R R S+ P R S T + P RR+
Sbjct: 882 SPPRRRRRSPSPPPRRRRRDSYSPSRRRRDSPTPSPPPRRRR 923
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 400 PSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSR 528
P RR +PSR R P+ P P RR ++ + P RR+ R
Sbjct: 895 PRRRRRDSYSPSRRRRDSPTPSPPP-RRRRKSPSPSPPRRRRR 936
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Frame = +1
Query: 400 PSLRRGRCPTPS--RERERCPSHRPVPFARR-----SRTRAKKP--TRRKSRKV---YEE 543
P RR + P+PS R R R PS+ P P R RA P RR RKV E+
Sbjct: 918 PPRRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPSPRRARRKVASPEEQ 977
Query: 544 LRLLQNGGATR 576
R NG +R
Sbjct: 978 DRQKSNGRNSR 988
>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +1
Query: 403 SLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEEL------RLLQNG 564
S +R R + SR R R S P P + + RA+KPT+ S Y+E+ L + G
Sbjct: 5 SPKRARSRSRSRSRSRSRSKSPRPKVAKVK-RARKPTKPASHPTYQEMIATAITSLKERG 63
Query: 565 GATR 576
G++R
Sbjct: 64 GSSR 67
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 397 SPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEEL 546
SP R R +P+ R R SH P + + + +K +RKSR E L
Sbjct: 264 SPRRRHSRSRSPTHRRHRSRSHSPEKKKHKKKEKKEKDEKRKSRAEDEGL 313
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 409 RRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSR 528
RR R P+P R S P RR +R++ PT R+ R
Sbjct: 244 RRSRSPSPHHRSHRSRSRSRSP--RRRHSRSRSPTHRRHR 281
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 370 NRDCHQTGYS-PSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEEL 546
N+DC + S + R P S R + P+ RP R++ R +KPTRR + ++
Sbjct: 494 NKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRP----RKNSPRTRKPTRRPRKNTHKSR 549
Query: 547 R 549
R
Sbjct: 550 R 550
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 370 NRDCHQTGYS-PSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEEL 546
N+DC + S + R P S R + P+ RP R++ R +KPTRR + ++
Sbjct: 131 NKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRP----RKNSPRTRKPTRRPRKNTHKSR 186
Query: 547 R 549
R
Sbjct: 187 R 187
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 31.9 bits (69), Expect = 0.49
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +1
Query: 220 SRQKRSL*RLPTGTS*WKASTKRRKTSTGIFQGSSSDVTRC--LKARRLRLWNRDCHQTG 393
S +S R P+G S ++R S S +R ++R R +R +
Sbjct: 177 SGTSKSRSRSPSGRKSRSRSPRKRSRSPRKMLRSPRKRSRTPRKRSRSPRKRSRSPRKGS 236
Query: 394 YSPSLRRGRCP--TPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEE 543
++P +R R P R +ER HR +R R+R+ P+ RKS + +++
Sbjct: 237 HTPK-KRSRSPRRNSQRHKERSRYHRSRSRSRHRRSRSNSPSMRKSDRKFKK 287
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 397 SPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYE 540
+P R R +P+++ R S P RRSR+ ++ RK R YE
Sbjct: 70 TPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRSPRRESIDRKRRSSYE 117
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +1
Query: 376 DCHQTGYSPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSR 528
D + G+S R R R R S P RRSR+ KK +R KSR
Sbjct: 41 DDRKRGHSRGRRDDRRGGKRRSFSRSKSRTPPRHRRRSRSPNKKHSRSKSR 91
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 31.9 bits (69), Expect = 0.49
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 319 SSSDVTRCLKARRLRLWNRDCHQTGYSPSLRR-GRCPTPSRERERCPSHRPVPFARRSRT 495
SSSD T+ A R R D T +PSL G P R + P H+ +S
Sbjct: 342 SSSDETKPSPATRRRSHTLDTITTSPTPSLTPIGEAVIPQRVLDSMPVHQQRMLQAQSLA 401
Query: 496 RAKKPTRRKSRKVYEELRLLQN 561
+A+ P + S + + + +N
Sbjct: 402 QARLPRNKSSESLTVQTKFSRN 423
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 337 RCLKARRLRLWNRDCHQTGYSPSLRRGRCPTPS---RERERCP--SHRPVPFARRSRTRA 501
+C + R+ + RDC + Y GR P+P R R R P R RRSR+R+
Sbjct: 88 KCYECGRVGHFARDCTRRRYGG----GRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRS 143
Query: 502 KKPTRRKS 525
RR+S
Sbjct: 144 GSRERRRS 151
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.1 bits (57), Expect(2) = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 220 KCCTSKFTWN 191
KCCTS +TWN
Sbjct: 1829 KCCTSNYTWN 1838
Score = 21.4 bits (43), Expect(2) = 1.7
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -2
Query: 217 CCTSKFTWNL 188
CCT ++ WN+
Sbjct: 1860 CCTHEYGWNI 1869
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/111 (24%), Positives = 40/111 (36%)
Frame = +1
Query: 217 TSRQKRSL*RLPTGTS*WKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGY 396
+S RSL R + T+ + T+R +T SS+ TR L R ++
Sbjct: 691 SSNTTRSLTRRSSNTT--RGHTRRSSNTTRSHTRRSSNTTRSLTRRSSNTTRSHTRRSSN 748
Query: 397 SPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEELR 549
+ R +R R S+ RRS + TRR S R
Sbjct: 749 TTRRHTRRSSNTTRRHTRRSSNTTRSHTRRSSNTTRGHTRRSSNTTRSHTR 799
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/102 (23%), Positives = 39/102 (38%)
Frame = +1
Query: 271 KASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCPTPSRERER 450
++ T+R +T SS+ TR R R ++ + R +R R
Sbjct: 718 RSHTRRSSNTTRSLTRRSSNTTRSHTRRSSNTTRRHTRRSSNTTRRHTRRSSNTTRSHTR 777
Query: 451 CPSHRPVPFARRSRTRAKKPTRRKSRKVYEELRLLQNGGATR 576
S+ RRS + TRR S+ +L + Q G T+
Sbjct: 778 RSSNTTRGHTRRSSNTTRSHTRRSSK----QLAVTQGGQVTQ 815
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 424 PTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVY 537
P+P RER + PSHRPV + RS +P ++S + Y
Sbjct: 556 PSP-RERSQAPSHRPVARSPRS-DHENRPMDKQSLRGY 591
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 478 ARRSRTRAKKPTRRKSRKVYEELRL 552
+RR R R PTR +S+KVY + R+
Sbjct: 1275 SRRDRDRRLPPTRERSKKVYGQARV 1299
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 397 SPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRKVYEELRLLQNGGATR 576
SP + R +PS + E RP P RRSR P RK R++ ++ + L N A +
Sbjct: 136 SPDSHKSRSESPSSDGESPDRQRPSPH-RRSR-----PRNRKDRQLDKKTKTLPNSYAPK 189
Score = 27.9 bits (59), Expect = 8.0
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 316 GSSSDVTRCLKARRLRLWNRDCHQTGY-SPSLRRGRCPTPSRERERCPSHRPVPFARRSR 492
G S D R RR R NR Q + +L P + RER R + RSR
Sbjct: 151 GESPDRQRPSPHRRSRPRNRKDRQLDKKTKTLPNSYAPKRDKPRERKKVARDRSRSPRSR 210
Query: 493 TRAKKPTRRKSRKVYEELRLLQNGGATRD 579
+R+++ T+R YE+ +N TRD
Sbjct: 211 SRSRERTKRH----YEKYGRDRNRERTRD 235
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = +1
Query: 352 RRLRLWNRDCHQTGYSPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRK 531
RRL W R + R+ R SR R R R RR R R + RRK ++
Sbjct: 672 RRLTGWRRRIRRQRRRKRRRKRRRQRRSRRRRRRRRRRRRSQLRRKRRRKVRARRRKRQR 731
Query: 532 VYEELR 549
+ R
Sbjct: 732 ILRRRR 737
>SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9)
Length = 260
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 411 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEANEKE 521
PR+ P+ + R +P P+R+E +D S A + +
Sbjct: 146 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 182
>SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 735
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 411 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEANEKE 521
PR+ P+ + R +P P+R+E +D S A + +
Sbjct: 588 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 624
>SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 411 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEANEKE 521
PR+ P+ + R +P P+R+E +D S A + +
Sbjct: 34 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 70
>SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09)
Length = 829
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 411 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEANEKE 521
PR+ P+ + R +P P+R+E +D S A + +
Sbjct: 706 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 742
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 384 SDGVLTITAPRKVPDAVKGE-RKVPIAQTGPVRKEI 488
SD T + PD KGE RKVP+A P++ EI
Sbjct: 285 SDSSPTSDPVSEFPDVFKGEVRKVPLAVREPLKNEI 320
>SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 411 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEANEKE 521
PR+ P+ + R +P P+R+E +D S A + +
Sbjct: 100 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 136
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 433 SRERERCPSHRPVPFARRSRTRAKKPTRRKSR 528
SRERER R RTR K P R K R
Sbjct: 272 SRERERSRDRERSRDRERDRTREKSPEREKDR 303
>SB_26991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 442 RERCPSHRPVPFARRSRTRAK 504
R RCPS+ +P+ R S TR++
Sbjct: 81 RTRCPSYTSIPYVRGSTTRSE 101
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 412 RGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSR 528
RG+ +PS R R S RSR+R++ +R +SR
Sbjct: 33 RGKAQSPSGSRSRSRSRSRSQSQSRSRSRSRSRSRSRSR 71
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 402 ITAPRKVPDAVKGERKVPIAQTG 470
+T+ RKVP+ V +RKVP TG
Sbjct: 42 VTSQRKVPNMVTSQRKVPNMVTG 64
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 402 ITAPRKVPDAVKGERKVP 455
+T+ RKVP+ V G RKVP
Sbjct: 52 VTSQRKVPNMVTGRRKVP 69
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 399 TITAPRKVPDAVKGERKVP 455
T+T+ RKVP+ V RKVP
Sbjct: 91 TVTSQRKVPNMVSSRRKVP 109
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 357 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 455
P TV SR + +T+ RKVP+ V RKVP
Sbjct: 109 PNTVTSRRKVPNM--VTSRRKVPNMVTSRRKVP 139
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 312 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVP 455
SR+ V P V SR + +T+ R+VP+ V G+RKVP
Sbjct: 204 SRRKVPNMVTSRRKIPNMVTSRRKVPNM--VTSRREVPNMVTGQRKVP 249
>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +1
Query: 352 RRLRLWNRDCHQTG----YSPSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRR 519
+ LR W C T Y S P PS ++R + PV + S A+KP RR
Sbjct: 343 KSLRKWVDGCFYTAPVASYMESSGVAGKPLPSTPKQRTSTEIPVITSAPSSQSAEKPERR 402
Query: 520 KSRKVYE 540
S + E
Sbjct: 403 TSSESKE 409
>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2103
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 307 IFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCPTPSRERERCPSHRPVP--FA 480
+F GS D ++C + R N+ +Q +RG+ P+ R H+ P A
Sbjct: 1586 LFTGSKHDASKCYENMRRGEENKSEYQNVVQGLKQRGKKPS-LRAASASRGHQATPDKQA 1644
Query: 481 RRSRTRAKKPTRRKSRK 531
R R + P R +RK
Sbjct: 1645 YREREGLQPPHNRHNRK 1661
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 411 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEANEKE 521
PR+ P+ + R +P P+R E +D S A + +
Sbjct: 1326 PRRPPEGKRRRRILPQVPPRPIRHEAQDDSSSAEDSD 1362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,169,537
Number of Sequences: 59808
Number of extensions: 367123
Number of successful extensions: 1384
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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