Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0913
         (412 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    23   1.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   2.7  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   2.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   2.7  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 333 RVTRVCDGECAHSVVFSACCS*FNVVPAVVVNT 235
           R+ R+C+GE A +    +C S   V P+V+  T
Sbjct: 45  RLQRICNGEVAVNKCEGSCKS--QVQPSVITPT 75


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 309 RHHRPW*LGHYHHF 350
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 309 RHHRPW*LGHYHHF 350
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 309 RHHRPW*LGHYHHF 350
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,596
Number of Sequences: 336
Number of extensions: 1691
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)