Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0913
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...   171   2e-43
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...   168   2e-42
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...   163   6e-41
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    30   0.63 
03_05_0830 + 28034179-28035492                                         29   1.4  
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893...    27   5.8  
07_03_1085 - 23851852-23853165                                         27   5.8  

>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score =  171 bits (415), Expect = 2e-43
 Identities = 78/107 (72%), Positives = 91/107 (85%)
 Frame = +1

Query: 28  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 207
           MVAAKK KK+ ++IN++L LVMKSGKY LGYK  L+TLR  KAKLVII+ N PPLRKSEI
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60

Query: 208 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 348
           EYYA+LAK  VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107


>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score =  168 bits (408), Expect = 2e-42
 Identities = 75/108 (69%), Positives = 87/108 (80%)
 Frame = +1

Query: 31  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 210
           V A  QKK+ ++IN++L LVMKSGKY LGYK  LKTLR  K KL+I+A N PPLRKSEIE
Sbjct: 43  VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102

Query: 211 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 354
           YYA+L K  VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 103 YYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score =  163 bits (395), Expect = 6e-41
 Identities = 72/104 (69%), Positives = 84/104 (80%)
 Frame = +1

Query: 49  KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 228
           KK  E IN++L LVMKSGKY LGYK  LKTLR  K KLVI+A N PPLRKSEIEYYA+L 
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185

Query: 229 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 360
           K  V+H++GNN++LGTACGKYYRVC L++ DPGDSDI   LPE+
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
 Frame = +1

Query: 79  LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG--VH 243
           L LV ++ +  CL  G K+ +K++R+G+  L IIA N  P+    I +  +L +     +
Sbjct: 33  LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI--DVITHVPILCEEANIPY 90

Query: 244 HYSGNNIELGTA-CGKYYRVCTLAITDPGDSDI 339
            Y  +  +L TA   K    C L +T P   ++
Sbjct: 91  VYVPSKEDLATAGTTKRPTCCVLVLTKPAKGEL 123


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 97  SGKYCLGYKQTLKTLRQGKAKLVIIAKN 180
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
            8939751-8939817,8940421-8940724,8942993-8942996,
            8944539-8946449
          Length = 1387

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 31   VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 186
            V++  Q   +ES+ + L  V  SG Y LG+KQ L+T  +G     I+    P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383


>07_03_1085 - 23851852-23853165
          Length = 437

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  SGKYCLGYKQTLKTLRQGKAKLVIIAKN 180
           +GKY  G   TLK L  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,262,710
Number of Sequences: 37544
Number of extensions: 186015
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)