Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0913
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   9.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -2

Query: 336 VRVTRVCDGEC--AHSVVFSACCS*F 265
           V VT  C+     AH VV SAC S F
Sbjct: 36  VDVTLACNEASLKAHKVVLSACSSYF 61


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 200 DFLSGGAFLAMITSFALPCRRV 135
           DFL+GG   A+  +   P  RV
Sbjct: 13  DFLAGGVAAAISKTTVAPIERV 34


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 200 DFLSGGAFLAMITSFALPCRRV 135
           DFL+GG   A+  +   P  RV
Sbjct: 13  DFLAGGVAAAISKTTVAPIERV 34


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 40  KKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLR 144
           +KQ+  I +   + A   K  K+ + YK+ LK  R
Sbjct: 413 QKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKR 447


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 279 MRKILQSVHTRHH 317
           +++IL+SVH  HH
Sbjct: 15  IQQILESVHHCHH 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,132
Number of Sequences: 438
Number of extensions: 1697
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)