Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0912
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    27   3.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   3.6  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   4.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.2  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   6.2  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   8.2  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   8.2  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   8.2  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   8.2  
SPBC146.08c |||translation initiation factor eIF1A-like|Schizosa...    25   8.2  

>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 239 LSLSGISKKHTIHSTVWILSGVQYY-FSVGSGFN 141
           +SLS    KH  HS +  +SG+ Y+  SVG+G +
Sbjct: 175 ISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLS 208


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 710 YALVGPILALIIEVIVKVHKITLYTFLKKMRDSLEDVW 597
           YA+   I+ L+IEV +      L  +L+K  D + D+W
Sbjct: 206 YAVRTSIVRLLIEVEMHEEAHQLLVYLQKEDDQILDIW 243


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 270  RYLNFGSCHLP*SFRHQ 220
            R   FGSCH+P S RH+
Sbjct: 1038 RAKGFGSCHVPNSLRHK 1054


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 438 KIAEKIVEYFPSAVFIVVDNKKMVQHLDSPAIK 536
           KIA  + EY           KK++Q LDSPA+K
Sbjct: 66  KIASPVAEYVEKTT---PGEKKVLQDLDSPALK 95


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 435 LKIAEKIVEYFPSAVFIVVDNKKMVQHLDSPAIK-VHKYSDGKWRPRESLIVFQSPYVLE 611
           LKI +  + Y P  + + + ++    H D    K V K+   K+    SL  FQS  +L 
Sbjct: 613 LKILKSAILYRPH-LRMSICSQLWNYHADFEKSKSVGKFDSAKYDEISSL--FQS-LILS 668

Query: 612 TVSHLLQKGVERDLVDFDNYL 674
           ++S        ++LVDFD YL
Sbjct: 669 SMSADTSNFSNQELVDFDKYL 689


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 99  TALVSNNHKMSEVSIETGAYAKIILHAAKYPHCAVNGVLLA-DAGKTK-EGGRNQSLDIV 272
           T   SN    + VS    A  + +L ++  P   +NG L + D+  T  +  RN   D  
Sbjct: 115 TEATSNERPFNPVS---AANLERLLMSSTGPQTPINGELKSNDSQDTAFQSSRNMPSDTS 171

Query: 273 DAIPLFHHSHYVSPMA 320
            A P + HS   SP+A
Sbjct: 172 VASPDYSHSQSSSPIA 187


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 372 IAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAVFIVVDNKKMVQHLDS 524
           + G  A C N    IV   PG    EK++E  P+   I   N   V ++ S
Sbjct: 43  MGGTIAGCANSSLEIVNYIPGSVGIEKLIEAVPAIKAIANINGVQVTNMGS 93


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 557 QMETKGIFNCFPITIRPR 610
           ++E  GIF C P+ + PR
Sbjct: 409 RIEVTGIFRCVPVRLNPR 426


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 434 PWTSFNNIITEVLAGCIVTC 375
           P  S  NII +VLAGC   C
Sbjct: 70  PNYSLRNIIWDVLAGCSTAC 89


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 372 IAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAVFIVVDNKKMVQHLDS 524
           + G  A C N    IV   PG    EK++E  P+   I   N   V ++ S
Sbjct: 43  MGGTIAGCANSSLEIVNYIPGSVGIEKLIEAVPAIKAIANINGVQVTNMGS 93


>SPBC146.08c |||translation initiation factor
           eIF1A-like|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 438 KIAEKIVEYFPSAVFIVVDNKKMVQHLDSPAIKVHKYSDGKWRPRESLIVFQSPYVLE 611
           ++  K+V+   SA+F+VV+N      ++ P     KY +  W  R   ++      LE
Sbjct: 21  QVVAKVVQLKGSALFMVVENNGQELLVEMPP----KYRNKIWVRRNGFVIVDKSEFLE 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,875
Number of Sequences: 5004
Number of extensions: 53665
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)