Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0912
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418...    75   6e-14
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761...    28   8.6  
03_05_0041 - 20169308-20169317,20169485-20170491                       28   8.6  
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490...    28   8.6  
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395...    28   8.6  

>04_03_0108 -
           11340504-11340680,11341580-11341665,11341784-11341827,
           11342339-11342428,11343762-11343928,11343986-11344010,
           11344636-11344797,11345376-11345422,11345926-11345985,
           11346094-11346465
          Length = 409

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
 Frame = +3

Query: 153 AYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQS--LDIVDAIPLFHHSHYVS--PMA 320
           AY K+ LHA K+P  AVNG+L+   G+  +G  + +  + I DA+PL HH H++   P  
Sbjct: 13  AYVKLALHALKHPAAAVNGLLV---GRLLDGAASPAAVVSIADAVPLSHHPHHLPLLPTL 69

Query: 321 EVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLK-IAEKIVEYFPSAVFIVVDN 497
           E+ALT +E    ++   + GYY A  N R +  +  P  K + + +   FP A  +++DN
Sbjct: 70  ELALTLVEDHFAAQGLAVVGYYHA--NARRDDADLPPVAKRVGDHVFRNFPRAAVLLLDN 127

Query: 498 KKM 506
           KK+
Sbjct: 128 KKL 130


>06_01_0981 +
           7613381-7614086,7614203-7614282,7614883-7614960,
           7615166-7615261,7615370-7615441,7615676-7615729,
           7615819-7615884,7616291-7616335
          Length = 398

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 675 RGNCQSPQDHALHLFEEDARQSRGRMVIGKQLKI 574
           RG C   +  ++HL+++DA    G  ++G Q+ +
Sbjct: 149 RGGCSRGKGGSMHLYKKDANFYGGHGIVGAQVPL 182


>03_05_0041 - 20169308-20169317,20169485-20170491
          Length = 338

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 716 FLYALVGPILALIIEVIVKVHKITLYTF 633
           FLY LVG ++A++  ++V+V  + +  F
Sbjct: 272 FLYTLVGLMIAMVTHLLVRVESLQIQRF 299


>03_02_0010 +
           4903473-4903525,4904117-4904175,4904285-4904355,
           4904469-4904585,4907001-4907024,4907055-4907117,
           4907303-4907407,4907552-4907602,4907702-4908535
          Length = 458

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 GAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIP 284
           G    I +    +P    NGV++   GK  +GGR   ++ +   P
Sbjct: 168 GPNVTIAVQDPTFPGYVDNGVIMGQTGKADDGGRYAGIEYMRCAP 212


>02_01_0541 -
           3950336-3950353,3950660-3951061,3951174-3951431,
           3951554-3951754,3951861-3952203,3952286-3952344,
           3952757-3953082,3953283-3953745,3954180-3954794,
           3955600-3955896
          Length = 993

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
 Frame = +3

Query: 264 DIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLK- 440
           DI++AI        + P + V+  +++     + R+     AAC N  + I+++ PG+K 
Sbjct: 102 DIIEAIEDAGFEAELLPDSTVSQPKLQNTLSGQFRIGGMTCAACVNSVEGILKKLPGVKR 161

Query: 441 ----IAEKI--VEYFPSAV 479
               +A  +  VEY PS +
Sbjct: 162 AVVALATSLGEVEYDPSVI 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,421
Number of Sequences: 37544
Number of extensions: 333944
Number of successful extensions: 917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)