Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0912
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   3e-22
SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)          29   2.9  
SB_55876| Best HMM Match : 7tm_1 (HMM E-Value=8.3e-07)                 29   2.9  
SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)                      29   3.8  
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         28   6.6  

>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score =  102 bits (244), Expect = 3e-22
 Identities = 57/135 (42%), Positives = 81/135 (60%)
 Frame = +3

Query: 141 IETGAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSPMA 320
           I   AYAK++LHA+KYPH AVNGVLL +   T +G     L ++DA+PLFHH   ++P+ 
Sbjct: 5   ISARAYAKMLLHASKYPHKAVNGVLLGEE-VTHDG----ELYVLDAVPLFHHCLGLAPLL 59

Query: 321 EVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAVFIVVDNK 500
           EVALTQ+++  ++    I GYY A E+  +N  +     KI EKI +   +   +++DN 
Sbjct: 60  EVALTQVDSYCKTLGHHIIGYYQANEHIENNSPDNI-AYKIGEKIADQCSNGFILMIDNS 118

Query: 501 KMVQHLDSPAIKVHK 545
           KM    D  A KV K
Sbjct: 119 KMSISCDEVACKVIK 133


>SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)
          Length = 290

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 207 GVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRVIAGYY 386
           G ++AD   TK GGR    +I + I      H+++P+  +A  + E +     + +  Y 
Sbjct: 130 GAVMAD---TKTGGRWSPSEITEKIKQTRTGHHIAPIVFLAYPEDEKLCIM--KYLKEYL 184

Query: 387 AACENFRDN 413
              EN R+N
Sbjct: 185 LRTENLRNN 193


>SB_55876| Best HMM Match : 7tm_1 (HMM E-Value=8.3e-07)
          Length = 394

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 2/146 (1%)
 Frame = +3

Query: 231 KTKEGGRNQSLDIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRV--IAGYYAACENF 404
           KT+E  R Q + +   I +   S Y+     +++  I  + ++  +   I          
Sbjct: 216 KTREKSRKQRVTVTYVIWVALLS-YLPIAVTISVIAIRGLTENNTKTFQILDIVFTAGAL 274

Query: 405 RDNIVERCPGLKIAEKIVEYFPSAVFIVVDNKKMVQHLDSPAIKVHKYSDGKWRPRESLI 584
            D  V R     I + +     + V  +       +H D    K+ K S+GK R  +++ 
Sbjct: 275 IDPFVYRWRNRDIRKSVTYTLRNFVETIWSRPTTSRHFDRKVRKLVKDSNGKLRKSDNVS 334

Query: 585 VFQSPYVLETVSHLLQKGVERDLVDF 662
           VF  P  L+ ++ L  +G+ R  VD+
Sbjct: 335 VF--PNALKNIAKL--RGITRKFVDY 356


>SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)
          Length = 145

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 378 GYYAACENFRDNIVERCPGLKIAEK 452
           G+Y AC++   +IVERCP +  + K
Sbjct: 80  GFYTACKDVCRSIVERCPSVFSSRK 104


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 438 KIAEKIVEYFPSAVFIVVDNKKMVQHLDSPAIK-VHKYSDGKWRPRESLIVFQSPYVLET 614
           ++ +++ E F      + D +++ Q L  P  + +H++  G   P +  +V QSP   ET
Sbjct: 164 QLDQRVQEKFEPLAQYIADIRRLCQRLKLPKSEWLHQFVRGLRGPLKEYVVLQSPADFET 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,160,569
Number of Sequences: 59808
Number of extensions: 408919
Number of successful extensions: 913
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)