Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0912
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-4|CAB02093.1|  196|Caenorhabditis elegans Hypothetical pr...    63   2e-10
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    32   0.47 
U50311-7|AAA92311.1|  401|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   5.8  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   5.8  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   5.8  

>Z79754-4|CAB02093.1|  196|Caenorhabditis elegans Hypothetical
           protein F25H2.4 protein.
          Length = 196

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
 Frame = +3

Query: 141 IETGA--YAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSP 314
           +ET A  Y+ IILH  KYP   V G+L+ +    K+G +   + +   +PL H S  ++P
Sbjct: 5   VETQALPYSTIILHCLKYPAKGVFGLLIGN----KKGDK---VTVTSCVPLCHESTPLAP 57

Query: 315 MAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAVFIV-V 491
             E+A   +     +    + G Y +     D  +      ++A++I     SA  +V V
Sbjct: 58  PLELATALVHGKFGAS---LVGVYFSNATPSDTSLN-VYATRLADRISSVTSSAAILVQV 113

Query: 492 DNKKMVQHLDSPAIKVHKYSDGKWRPRESLIVFQSPYVLETVSHLLQKGVERDLVDFDNY 671
            N+++V   +   +  ++     W+  E+  +FQ    L  +  ++QK + R+L DF+N+
Sbjct: 114 MNERLVSDCEQDRLVAYEKDGDSWK--ETKTIFQGSNFLRGLQAVIQKKLYRELSDFENH 171

Query: 672 LDDQSQDWTNQGI 710
           LD+   D+ N  +
Sbjct: 172 LDNPEFDFYNTNL 184


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 318 AEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAV 479
           A   L + E   + E  +   YYA  +   D I++   G +I EKI +YFP  V
Sbjct: 261 ALATLQKFEETTKPEVPIDHEYYAQRKEITDMILKAARGAEIHEKIEKYFPGLV 314


>U50311-7|AAA92311.1|  401|Caenorhabditis elegans Hypothetical
           protein C25E10.1 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +3

Query: 321 EVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFP--SAVFIVVD 494
           EVA   I  +  +E ++I      C+ FRD I +          I+ Y P    +   +D
Sbjct: 318 EVAFLIINFVLHNEEKIIGESLTVCDKFRDQIADGLHEYYKKNDIINYAPRIKKMMSTID 377

Query: 495 NKKMVQHLD 521
             K + + D
Sbjct: 378 AMKRIHYDD 386


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 555  GKWRPRESLIVFQSPYVLETVSHLLQKGVER 647
            G+WRPR   ++F+  + LE ++ L Q  VER
Sbjct: 1280 GQWRPRGDSLIFEHQWELEKLTRLQQ--VER 1308


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 555  GKWRPRESLIVFQSPYVLETVSHLLQKGVER 647
            G+WRPR   ++F+  + LE ++ L Q  VER
Sbjct: 1324 GQWRPRGDSLIFEHQWELEKLTRLQQ--VER 1352


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 555  GKWRPRESLIVFQSPYVLETVSHLLQKGVER 647
            G+WRPR   ++F+  + LE ++ L Q  VER
Sbjct: 1280 GQWRPRGDSLIFEHQWELEKLTRLQQ--VER 1308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,442
Number of Sequences: 27780
Number of extensions: 304389
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)