Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0912
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665...    91   7e-19
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    32   0.33 
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    29   2.3  
At2g01290.1 68415.m00043 expressed protein                             29   4.1  
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ...    28   5.4  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    28   5.4  

>At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665:
           Uncharacterised protein family (UPF0172)
          Length = 208

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
 Frame = +3

Query: 141 IETGAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSPMA 320
           I   AY K++LH+ ++   AVNGVL+       +G     ++I D++PLFH +  + P  
Sbjct: 13  ISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDG----VVEISDSVPLFHSNLALLPPL 68

Query: 321 EVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLK-IAEKIVEYFPSAVFIVVDN 497
           E++L  IE    ++   I GY+ A E F D  VE C   K I + I  YFP A  ++++N
Sbjct: 69  EISLIMIEEHYVAQGLSIVGYFHANERFDD--VELCGVAKNIGDHISRYFPQAPILLLNN 126

Query: 498 KKMVQ----HLDSPAIKV-HKYSDGKWR----PRESLIVFQSPYVLETVSHLLQKGVERD 650
           KK+         SP +++  K +   WR       S ++ + P     +S  +     +D
Sbjct: 127 KKLEALSKGKERSPVMQLCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKD 186

Query: 651 LVDFDNYLDDQSQDWTNQGI 710
           + D D++LDD ++DW N G+
Sbjct: 187 VTDVDDHLDDVTKDWLNPGL 206


>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 549 SDGKWRPRESLIVFQSPYVLETVSHLLQKGVERDLVDFDNYLDDQSQDWTNQGIEK 716
           S+G+       + F   ++ E V H ++  V     DF  YL+D    WTN+ I K
Sbjct: 111 SNGRGSINPKGLQFYKNFIQELVKHGIEPHVTLHHYDFPQYLEDDYGGWTNRKIIK 166


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
 Frame = +3

Query: 312 PMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAVFIVV 491
           P+   +LT +  +  S N++     +A  N     +E    L +     E F S   +  
Sbjct: 343 PLCLTSLTGLRVLDLSSNQLTGNVPSALAN-----LESLEYLSLFGNNFEGFFSLGLLAN 397

Query: 492 DNKKMVQHLDSPAIKVHKYSDGKWRPRESLIVFQ-SPYVLETVSHLLQKGVERDLVDF-D 665
            +K  V  LDS +  +    +  W+P+  L+V       LE V H L    +   VD  D
Sbjct: 398 LSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSD 457

Query: 666 NYLDDQSQDWTNQGIEKL 719
           N +      W  +   KL
Sbjct: 458 NQIHGNFPSWLLENNTKL 475


>At2g01290.1 68415.m00043 expressed protein
          Length = 265

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 411 NIVERCPGLKIAEKIVEYFPSAVFIVVDNKKMVQHL 518
           N+V+   G  + EK++E       ++VD+ KMV+H+
Sbjct: 125 NLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHI 160


>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein contains Pfam
           profile PF02469: Fasciclin domain
          Length = 445

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 214 FLLMPERLRKVAGTKV*ISLMLYHYSTTAITSHQWPK-*HSHR 339
           FLL P  L+ +       SL+++H     ITS QWP   H HR
Sbjct: 94  FLLEPRNLKSLQ------SLLMFHILPKRITSPQWPSLSHHHR 130


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 693 NPGSDHRGNCQSPQDHALHLFEED-ARQSRGRMVIGKQLKIP 571
           NP + H    QSP  HA ++ E+D A + R  +  G+  +IP
Sbjct: 208 NPDNKHSEENQSPHHHANNVMEQDQAAEEREIISPGEHKEIP 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,933
Number of Sequences: 28952
Number of extensions: 277857
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)