Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0909
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 72 7e-14
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 34 0.016
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 32 0.086
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.086
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 30 0.35
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 29 0.61
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 28 1.4
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 28 1.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.4
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 1.4
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 2.4
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 3.2
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 26 4.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 5.6
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 7.5
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 25 7.5
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 9.9
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 9.9
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 72.1 bits (169), Expect = 7e-14
Identities = 39/97 (40%), Positives = 59/97 (60%)
Frame = +1
Query: 124 VQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSK 303
+Q ++ V ++L++QL EN V EL+ + DS +YK IGP LVKQ EEA+ NV
Sbjct: 11 LQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNVKT 70
Query: 304 RMEYISKEIKRTDDHICALENKQEALQENLNKLRNDI 414
R+++I+KEI R LEN+ + QE +K++ I
Sbjct: 71 RLDFINKEIAR-------LENQTKISQEEFSKVKGAI 100
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 34.3 bits (75), Expect = 0.016
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 154 QKQQLDSQLN-ENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEI 330
QK + S +N + +A KEE K+ E + I DL E +Q + +E + E
Sbjct: 119 QKASVSSMVNRKQRAAKEEQKI---QEEFERQI------TDLLEEQQQLKLEIERLEAET 169
Query: 331 KRTDDHICALENKQEALQENLNKLRND 411
+R + E ++EAL+E +LRN+
Sbjct: 170 ERANSETEQYEKQKEALEEEYEELRNE 196
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 31.9 bits (69), Expect = 0.086
Identities = 21/98 (21%), Positives = 50/98 (51%)
Frame = +1
Query: 130 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 309
KD K + ++ +++++ E KAV+ E+K+ E + + K E+ +Q+ +
Sbjct: 61 KDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPK---EKEKQDT---I 114
Query: 310 EYISKEIKRTDDHICALENKQEALQENLNKLRNDIGKL 423
++IS ++ + +E + E+L+ + + D+ KL
Sbjct: 115 QWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKL 152
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 31.9 bits (69), Expect = 0.086
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +1
Query: 268 QDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDIGKLKLKA*KMC 447
+DLE+ N +++++ + K + LE+ ++ +E L KL D+GK++ + +
Sbjct: 299 EDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLE 358
Query: 448 ELKVK 462
+LKVK
Sbjct: 359 KLKVK 363
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.9 bits (64), Expect = 0.35
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = +1
Query: 124 VQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIG-PVLVKQDLEEARQNVS 300
++ D+ K+QL+SQL KA +K L +E YK +L+ + + + +
Sbjct: 1263 LKTDLANFRLNKEQLESQLQTEKAA---VKKLENSNEEYKRHNQEILLSLNSSTSTSSDA 1319
Query: 301 KRM--EYISKE--IKRTDDHICALENKQEALQENLNKLRNDIGKLKLKA*KMCELK 456
R+ E +SKE I+ + I L+++ E ++ L N+ + + K + ELK
Sbjct: 1320 SRLKNELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSKI-EQLELK 1374
Score = 29.5 bits (63), Expect = 0.46
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = +1
Query: 190 KAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENK 369
K++ E + L K+ EVY+ +++ L + Q++ ME I KE++ + + +
Sbjct: 639 KSIDESTRELEKNYEVYRN-EMTAIQESLSKRNQDLLSEMEAIRKELENS-------KYQ 690
Query: 370 QEALQENLNKLRNDIGKLKLKA 435
Q+ + L ND+ K +A
Sbjct: 691 QQLSTDRLTNANNDVEAFKKEA 712
Score = 25.4 bits (53), Expect = 7.5
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +1
Query: 178 LNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICA 357
L ENK + EL R ++E L KQ L +++ K E KE+ R D
Sbjct: 1017 LEENKHLNNELSSHR-NAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHADARST 1075
Query: 358 LENKQEALQENLNKLRNDIGKLKLKA 435
L+ +E + L ++ + ++ LKA
Sbjct: 1076 LQKLREDYTKALEQVEDLNKEIALKA 1101
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 29.1 bits (62), Expect = 0.61
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 229 SEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIK-RTDDHICALENKQEALQENLNKLR 405
SE +L+ L K E+ R+ +E + +K D+ AL+ + AL+E N+L
Sbjct: 391 SEQTQLVEEALTKVMKEKYREK-ENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLI 449
Query: 406 NDIGKLKLK 432
+IG K+K
Sbjct: 450 KEIGPEKVK 458
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/63 (20%), Positives = 35/63 (55%)
Frame = +1
Query: 130 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 309
++I+ +++ + +N+ +E + ++KD EV ++ ++ L +AR+N + M
Sbjct: 508 REIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAALM 567
Query: 310 EYI 318
E++
Sbjct: 568 EHM 570
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 190 KAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTD-DHICALEN 366
KA + +K D++ L GP++ +QD++ + + K + + + D I LE
Sbjct: 603 KAAVDRIKRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEE 662
Query: 367 KQEALQENL 393
+ L++ L
Sbjct: 663 AKTVLRDTL 671
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 1.4
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Frame = +1
Query: 151 TQKQ-QLDSQLNENKAVKEELKLLRK-----DSEVYKLIGPVLVKQ-DLEEARQNVSKRM 309
TQ Q +LDS + N +K+E+ L++ ++E +L KQ ++E ++
Sbjct: 435 TQMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKLTSLQ 494
Query: 310 EYISKEIKRTDDHICALENKQEALQENLNKLR---NDIGKLKL 429
E ++ ++ + L+NK+E L E LR D KL+L
Sbjct: 495 EQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQDSQKLRL 537
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 27.9 bits (59), Expect = 1.4
Identities = 29/116 (25%), Positives = 53/116 (45%)
Frame = +1
Query: 133 DIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRME 312
+I + V Q LD Q A EEL + +E L+ P+ +QD + + V + M
Sbjct: 2 NIAQEVAVLQYLDIQQENPNAPNEEL--FNRTAESSLLLEPI--EQD--QLKDLVEEWMH 55
Query: 313 YISKEIKRTDDHICALENKQEALQENLNKLRNDIGKLKLKA*KMCELKVKHFYSSI 480
+K + + + +N +A + +LRND+ K + + CE K++ Y +
Sbjct: 56 DSNKSDSKLLSNQVS-QNDNDARKNLRKRLRNDVLKDLAEEIQGCEKKLESLYEEV 110
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 142 KAVTQKQQLDSQLNENKAVKEELKLLRKDSE 234
KA + QQL SQL EN V ++ LRK E
Sbjct: 61 KASSGMQQLKSQLEENIPVNSAMENLRKVEE 91
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 241 KLIGPVLVKQDLEEARQNVSKRM 309
+ +GP L+ D+E+ R+N S+++
Sbjct: 281 RYLGPALLNPDMEDDRENTSRKL 303
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 277 EEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRN 408
E RQN + + + E++R + +E +++ +ENLNK RN
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRE-TQQIEIRKQKREENLNKRRN 52
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = +1
Query: 160 QQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRT 339
+QL++ L E K+ + L K+SE+ + + DLE + V + ++ T
Sbjct: 1551 EQLNNLLAEEKSAVKRLST-EKESEILQFNSRLA---DLEYHKSQVESELGRSKLKLAST 1606
Query: 340 DDHICALENKQEALQENLNKLRNDIGKL 423
+ + EN++ +L + L+N + L
Sbjct: 1607 TEELQLAENERLSLTTRMLDLQNQVKDL 1634
Score = 25.8 bits (54), Expect = 5.6
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Frame = +1
Query: 124 VQKDIKKAVTQKQQLDSQLNE-----------NKAVKEELKLLRKDSEVYKLIGPVLVKQ 270
++K+++K + +K Q + +L E N +K+EL LRK S+ + V
Sbjct: 1079 IEKNVQKLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFV-D 1137
Query: 271 DLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDIGKLK 426
DL+E S +E ++ E + + EAL E + L N + +K
Sbjct: 1138 DLKEK----SDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMK 1185
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 325 EIKRTDDHICALENKQEALQENLNKLRNDIGKLK 426
E ++ D I AL + ++LQE L ++ND L+
Sbjct: 330 ETEKLQDQIKALLERNQSLQEALETVKNDEKNLR 363
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +1
Query: 130 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 309
K I++ Q ++ ++N NK EEL +++ +L L+ Q ++E ++ +KR+
Sbjct: 358 KLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNKRL 417
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +1
Query: 166 LDSQLNENKAVKEEL-KLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTD 342
L +Q ++ + EL + SEV I K V ++ + KEI+ +
Sbjct: 811 LQTQSSDRQTAITELNEEFATSSEVDNKISIEETKLKFMNVNSYVMEQYDARKKEIEELE 870
Query: 343 DHICALENKQEALQENLNKLRND-IGKLK 426
+ + E LQ+ +N ++ D + KL+
Sbjct: 871 SKMSDFDQSVEELQDEMNSIKEDWVSKLE 899
>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 272 IWKKPDKTSPNVWSTLAKKSKEQMITYV 355
IWK+ T+P+V K+K+ TYV
Sbjct: 37 IWKRAMSTAPHVEYDAGSKTKKVATTYV 64
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 277 EEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRN 408
EEAR V + +I I AL+ E LQE KL N
Sbjct: 453 EEARSKVPDEFQTQYPDIANPPTLILALKGYIERLQEQQGKLNN 496
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 60 LKHNGGRNTKKVSKTARIISRCSKRHKESGHSE 158
L HN N + + + ++SR +R + HSE
Sbjct: 120 LWHNDYSNVRGMESMSSLVSRLPQRQSSASHSE 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,218
Number of Sequences: 5004
Number of extensions: 32378
Number of successful extensions: 146
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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