Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0909
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.65 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.86 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 395 INLEMILAN*N*KLEKCVN*K*NISILLL*LTCMFRELLLQIKILHINN 541
           IN+++ L N     ++ ++ K    I LL LTCM +E+L  +K   INN
Sbjct: 94  INIDVTLQN-----DEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINN 137


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 284 PDKTSPNVWSTLAKKSKEQMIT 349
           P+KT P++ STL K SK+ + +
Sbjct: 671 PNKTLPSLPSTLTKNSKQGLFS 692


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 292  NVSKRMEYISKEIKRTDDHIC 354
            NV+K       ++K TDD IC
Sbjct: 1682 NVNKHCTIHRTQVKETDDKIC 1702


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 584 QQFFHDYC 561
           QQFFH YC
Sbjct: 424 QQFFHCYC 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,494
Number of Sequences: 438
Number of extensions: 1991
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)