Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0908
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0438 - 18200329-18200430,18201203-18201335,18201964-182020... 99 3e-21
10_08_1034 + 22461397-22461702,22462311-22462524,22464936-224649... 30 2.1
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 30 2.1
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 29 3.6
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 29 3.6
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 29 4.8
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435... 29 4.8
01_06_0930 + 33134385-33138257 28 6.3
11_01_0158 + 1307648-1309462 28 8.3
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 8.3
01_04_0092 + 15950326-15951531 28 8.3
>07_03_0438 -
18200329-18200430,18201203-18201335,18201964-18202034,
18202377-18202466,18203200-18203288,18203886-18203961,
18204094-18204264
Length = 243
Score = 99.1 bits (236), Expect = 3e-21
Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Frame = +1
Query: 172 LEQFVLLAKGAKGSA--CAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNL 345
+EQF A SA A L+ + P + F ELL +P + +L YA+ L L L
Sbjct: 13 IEQFSAQAAALSSSAPQLAALVLEATSHPALFAFSELLSLPALSKLTGTQYASSLDVLRL 72
Query: 346 FAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLE 525
FAYGT KDY N + L Q +KL+ L++ TLA K +PY L++ELD+ NVR+LE
Sbjct: 73 FAYGTLKDYKSNSGNLPALLPDQVRKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELE 132
Query: 526 DLII-EAIYA 552
D +I E +Y+
Sbjct: 133 DFLINECMYS 142
>10_08_1034 +
22461397-22461702,22462311-22462524,22464936-22464997,
22465035-22465381,22465495-22465591
Length = 341
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 436 SDAVISCTGLWLILNSPICSQCSPYMC 356
+DAV C+GL+ I N+P SQ + C
Sbjct: 74 ADAVHGCSGLFAIFNTPSSSQSQSHSC 100
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 313 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 483
P L+ NLF+ K Y +N +YL + + KK + +E+ IP V
Sbjct: 399 PGKEELRQKNLFSVSDCKMYWQNSGEYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEV 458
Query: 484 LLEELDIKN 510
L ELD KN
Sbjct: 459 L--ELDNKN 465
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 496 IPQVTHCKGYISLVLQVLQWSDA 428
+P+VTHC + L+++ +W DA
Sbjct: 940 LPEVTHCNRLLKLLVEQRRWDDA 962
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 496 IPQVTHCKGYISLVLQVLQWSDA 428
+P+VTHC + L+++ +W DA
Sbjct: 389 LPEVTHCNRLLKLLVEQRRWDDA 411
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 433 DAVISCTGLWLILNSPICSQ 374
D +++CT WL + SP CSQ
Sbjct: 190 DMMMACTPSWLFIPSPACSQ 209
>03_06_0060 +
31341233-31342009,31342752-31342871,31343401-31343517,
31343615-31343704,31344279-31344386,31345124-31345306
Length = 464
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 130 DEPSSLLS-FSSNHPLEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMP 288
D+ LLS +S HPL + L +GA G+A +K V GV++ + P
Sbjct: 391 DQSRELLSTLASMHPLSAYERLRRGALGTAVDADVKPVPARDGVNLMEKARPKP 444
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +1
Query: 403 TTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHG--KLD 576
T+V+C +L + + +L KC+ L+ D N+ L DL ++ I G L
Sbjct: 1209 TSVKCLRLCNCEMRSLPGNMKCLSSLTKLDIYDCPNITSLPDL-PSSLQHICIWGCELLK 1267
Query: 577 QECKRVGSGTWP-LAEMR 627
+ C+ +WP +A +R
Sbjct: 1268 KSCRAPDGESWPKIAHIR 1285
>11_01_0158 + 1307648-1309462
Length = 604
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 73 H*IDIDVLKFKMNPMSMDRDEPSSLLSFSSNHPL 174
H + D ++F + P++ S L SFS++HPL
Sbjct: 49 HVLSADSIRFSIYPVASAAAAASLLASFSASHPL 82
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 127 RDEPSSLLSFSSNHPLEQFVLLAKGAKGSACAELIKQVLEAPGV 258
+DE S + +E FV +++ K S+C E +K+++ G+
Sbjct: 4492 KDETLSKNASMQRSAVENFVRVSESLKTSSCGERLKEIILEKGI 4535
>01_04_0092 + 15950326-15951531
Length = 401
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 544 IYADIIHGKLDQECK-RVGSGTWPLAEMRGLKMQLPLADVL 663
+ AD HG + + + R G G+WP A L+ +LP +V+
Sbjct: 289 VLADAPHGTVFKVWRLRTGKGSWPWAWTWELERRLPACEVI 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,381,443
Number of Sequences: 37544
Number of extensions: 399585
Number of successful extensions: 947
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -