Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0908
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)                     122   4e-28
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)
          Length = 266

 Score =  122 bits (293), Expect = 4e-28
 Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 11/192 (5%)
 Frame = +1

Query: 163 NHPLEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLN 342
           +H LEQ+VLLAK A+G+A   LIKQVLEAP ++VFGEL+EM NI+EL     A   + LN
Sbjct: 10  SHQLEQYVLLAKSARGAALTALIKQVLEAPALYVFGELIEMSNIQELAKTENAPFWQLLN 69

Query: 343 LFAYGTY---KDYIENKSDYLE--LTTVQCKKLQHLTIA--TLATQEKCIPYSVL-LEEL 498
           +FA+GTY   KD +     ++   + T+    L   +I    + T     P  +  L  L
Sbjct: 70  IFAFGTYTDYKDVVALLHIHVRHHVLTLYSWMLWSYSIFLDNMGTLPPLTPVQIKKLRHL 129

Query: 499 DIKNVRDL-EDLIIEAIYADIIHGKLDQECKRVGSGTWPLAEMRGLKMQL--PLADVLAD 669
            I ++    +DLIIEAIYADIIHGKLDQ+ K++       A  R +K +    +A++L D
Sbjct: 130 TIVSLASKSKDLIIEAIYADIIHGKLDQKNKQL---EVEYAMGRDIKPETVGTIAEILQD 186

Query: 670 WCNAWEAVLNSV 705
           WC + +++LNS+
Sbjct: 187 WCQSCDSILNSI 198


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +1

Query: 82   DIDVLKFKMNPMSMDRDEPSSLLSFSSNHPLEQFVLLAKGAKGSACAELIKQVLEAPGVH 261
            D+D++   +   + +  E S+    SS   LE  V   K    S+CA  ++  +    V 
Sbjct: 1244 DLDLVSSALKDATTETKELSATAVVSSTVSLEGIVDALK----SSCATTVRDAVARKLVQ 1299

Query: 262  VFGELLEMPNIKELESGPYATHLKTLN 342
            V   +LE   +KE+ S       +T N
Sbjct: 1300 VMSNILESAGLKEMTSKTIEQERRTSN 1326


>SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 529 LIIEAIYADIIHGKL-DQECKRVGSGTWPLAEMRGLKMQLPLADVLADWCNAWEAVLNSV 705
           LII      +I G+L D++C RV  G    AE+    + L +A+   + CN   A+L+S+
Sbjct: 157 LIIWTARLMLIKGRLADRDC-RVYGGLTHTAEVLVFTITLTVAECACNQCNENSAILSSI 215


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 97  KFKMNPMSMDRDEPSSLLSFSSNHPLEQFVLLAKGAKGSACAEL 228
           KF +N + MDR  P +   F S H       LA  A   ACA +
Sbjct: 228 KFWLNFLDMDRLSPQATSRFISEHRKPGLWALANNAGYGACAPI 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,113,560
Number of Sequences: 59808
Number of extensions: 449715
Number of successful extensions: 1012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)