Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0908
         (705 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    26   1.3  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.1  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.1  
U51225-1|AAA96405.1|  692|Anopheles gambiae hexamerin protein.         24   5.4  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   5.4  
AF020872-1|AAC31875.1|  692|Anopheles gambiae hexamerin A protein.     24   5.4  
AF020871-1|AAC31874.1|  692|Anopheles gambiae hexamerin A protein.     24   5.4  
AF020870-1|AAC31873.1|  692|Anopheles gambiae hexamerin A protein.     24   5.4  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    23   7.1  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -3

Query: 445  LQWSDAVISCTGLWLILN-SPICSQCSPYMCHRQTN*EFLNELHKVHSPAL*YLASLIAR 269
            ++W+  VI   G W + N   +    S  +       E+LN++    SPA      ++  
Sbjct: 906  VRWAHLVIPDVGAWQLRNHGEVTFHLSQVLSGHGFLREYLNKMRFTSSPACPRCPGVVEG 965

Query: 268  RKHALLEPP 242
             +H + E P
Sbjct: 966  VEHVMFECP 974


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 292 IKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLEL 402
           IK+   GP+   L    L  Y T +  + N+SD LE+
Sbjct: 15  IKDSLQGPHEKRLLNNLLATYNTLERPVANESDPLEV 51


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 292 IKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLEL 402
           IK+   GP+   L    L  Y T +  + N+SD LE+
Sbjct: 15  IKDSLQGPHEKRLLNNLLATYNTLERPVANESDPLEV 51


>U51225-1|AAA96405.1|  692|Anopheles gambiae hexamerin protein.
          Length = 692

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 667 DWCNAWEAVLNSV 705
           DW NAWEA +  +
Sbjct: 328 DWINAWEAKIRKI 340


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 668 SARTSANGSCIFKPRISAKGHV-PLPTRLHS 579
           S + S NGS  F P + +K  + P+P   HS
Sbjct: 43  SRKCSRNGSPKFAPAVQSKNRMPPVPPPKHS 73


>AF020872-1|AAC31875.1|  692|Anopheles gambiae hexamerin A protein.
          Length = 692

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 667 DWCNAWEAVLNSV 705
           DW NAWEA +  +
Sbjct: 328 DWINAWEAKIRKI 340


>AF020871-1|AAC31874.1|  692|Anopheles gambiae hexamerin A protein.
          Length = 692

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 667 DWCNAWEAVLNSV 705
           DW NAWEA +  +
Sbjct: 328 DWINAWEAKIRKI 340


>AF020870-1|AAC31873.1|  692|Anopheles gambiae hexamerin A protein.
          Length = 692

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 667 DWCNAWEAVLNSV 705
           DW NAWEA +  +
Sbjct: 328 DWINAWEAKIRKI 340


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 165 SPPRTICPFSKGS 203
           SP  T+CP SKG+
Sbjct: 617 SPNATVCPMSKGA 629


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,912
Number of Sequences: 2352
Number of extensions: 15852
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)