Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0908
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    48   5e-06
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical p...    29   4.3  
U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like pr...    29   4.3  
Z81111-6|CAB03269.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
 Frame = +1

Query: 223 ELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIE----NK-- 384
           E ++  +  P    F  L  +  +K L++         L LF  GT KDY E    N   
Sbjct: 214 ECVRTAVVDPKSFSFDHLERLSAVKALKTSD-PLMFTALELFISGTLKDYKEFVAKNPKF 272

Query: 385 -SDYLELT-TVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADI 558
            +++L++  T+  KK++ LT+ +LA ++  I    L ++LDI     LE+ +I+AI  + 
Sbjct: 273 VTEHLKVDETILLKKIRLLTLMSLAEEKNEISLDELAKQLDILADETLEEFVIDAIQVNA 332

Query: 559 IHGKLDQ----------ECKRVGSGTWPLAEMR 627
           I GK+++          + +R G+  W L E R
Sbjct: 333 ISGKINEMARTLIVSSYQHRRFGTEQWVLLEKR 365


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
 Frame = +1

Query: 256 VHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDY------LELTTVQC 417
           VH FGELL  P +K LE       +  L  F  G    +   + D+       +      
Sbjct: 219 VHNFGELLAHPILKSLEGTRERWIVDVLLAFNSGDLTRFFSLEGDWGGWDDLKKQKDFLT 278

Query: 418 KKLQHLTIATLATQEKCIPYSVLLEELDIK---NVRDLEDLIIEAIYADIIHGKLDQECK 588
            K++ + +  LA        SV  +E+  K      ++E L+++A+  D+I G ++Q  +
Sbjct: 279 AKIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALSKDLIRGDINQ-VE 337

Query: 589 RVGSGTWPLAEMRGLKMQLPLADVLADWCN 678
           +V   TW    +      + +A  ++ W N
Sbjct: 338 QVVYVTWVQPRVLDNPQIMQMATRISAWRN 367


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 325 HLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQ 429
           HLK +  F YG Y  Y++ K D L++   Q  + Q
Sbjct: 209 HLKRVKKFLYGQYPKYVDMKRDLLKIVKQQKPEAQ 243


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 556  IIHGKLDQECKRVGSGTWPLAEMRGLKMQLPLADVLADW 672
            I +G +DQ C  +G   W   E   LK QLP+    ADW
Sbjct: 960  IYNGDVDQACNYLGD-QW-FIEAFALKNQLPVTKPRADW 996


>Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.3b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 427 VISCTGLWLILNSPICSQCS 368
           +I+CTG WL  N P+C + S
Sbjct: 627 LITCTGNWLSTNPPLCKKYS 646


>Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical
           protein C27A7.3a protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 427 VISCTGLWLILNSPICSQCS 368
           +I+CTG WL  N P+C + S
Sbjct: 657 LITCTGNWLSTNPPLCKKYS 676


>U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like
           protein family protein22 protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 352 YGTYKDYIENKSDYLELTTVQCKKLQH 432
           YG   D+I+ K D++E+  + C+ L H
Sbjct: 62  YGVNYDFIQLKKDFIEMIRLDCEALFH 88


>Z81111-6|CAB03269.1|  332|Caenorhabditis elegans Hypothetical
           protein T01G5.7 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 271 ELLEMPNI-KEL--ESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKL 426
           +L+ M N+ +EL  ++  Y + L++ +   Y TY  + + KSD  EL   Q KKL
Sbjct: 123 QLIMMANLGEELGNDAKRYRSELESAHEELYQTYTIFDKEKSDLCELIEEQTKKL 177


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 381 QIGLFRINHSPVQEITASDHCNT 449
           Q+ +  ++H+ +QEITA   CNT
Sbjct: 257 QLSVLDLSHNSIQEITACAFCNT 279


>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical
           protein C26H9A.2 protein.
          Length = 1334

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 284 CQILKSWRVDLMQLI*KLLICLP 352
           C++ + WR  L+QL+ +LLI  P
Sbjct: 587 CEVNEEWRSSLLQLVKQLLIVAP 609


>Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical
           protein C09F12.2 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 644 FHWLMSWPT 670
           FHWLM+WPT
Sbjct: 549 FHWLMTWPT 557


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +1

Query: 259 HVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQ--- 429
           H+   L  M  +K L SG Y TH K ++  A  + +D    K+  +++ +++C       
Sbjct: 156 HIMNTLTSM--VKALGSGDYVTH-KKIHSIAKNSLQDRTLCKTPNVKIASLECLTALVQF 212

Query: 430 HLTIATLATQEKCIPYSVLLE 492
           H  I T   +  C     +LE
Sbjct: 213 HTPIYTTELEASCTMCIKILE 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,957
Number of Sequences: 27780
Number of extensions: 339805
Number of successful extensions: 809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)