Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0908
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02090.3 68414.m00133 COP9 signalosome complex subunit 7ii / ... 113 1e-25
At1g02090.2 68414.m00132 COP9 signalosome complex subunit 7ii / ... 113 1e-25
At1g02090.1 68414.m00131 COP9 signalosome complex subunit 7ii / ... 113 1e-25
At3g02200.2 68416.m00199 proteasome family protein contains Pfam... 44 1e-04
At3g02200.1 68416.m00198 proteasome family protein contains Pfam... 44 1e-04
At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta... 41 0.001
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta... 40 0.002
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ... 31 0.74
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 5.2
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 28 5.2
At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate synth... 28 5.2
At5g64970.1 68418.m08172 mitochondrial substrate carrier family ... 28 6.9
At5g62970.1 68418.m07901 F-box family protein contains F-box dom... 27 9.2
At4g02310.1 68417.m00312 kelch repeat-containing F-box family pr... 27 9.2
>At1g02090.3 68414.m00133 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 237
Score = 113 bits (272), Expect = 1e-25
Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 3/181 (1%)
Frame = +1
Query: 172 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 351
++Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA
Sbjct: 11 IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 352 YGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 531
+GT+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED
Sbjct: 71 HGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF 130
Query: 532 II-EAIYADIIHGKLDQECKRVGSGTWPLAEMRGLKM-QL-PLADVLADWCNAWEAVLNS 702
+I E +YA I+ GKLDQ KR P A R L+ QL + L++W N E +L S
Sbjct: 131 LINECMYAGIVRGKLDQ-LKRCFE--VPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLIS 187
Query: 703 V 705
+
Sbjct: 188 I 188
>At1g02090.2 68414.m00132 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 225
Score = 113 bits (272), Expect = 1e-25
Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 3/181 (1%)
Frame = +1
Query: 172 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 351
++Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA
Sbjct: 11 IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 352 YGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 531
+GT+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED
Sbjct: 71 HGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF 130
Query: 532 II-EAIYADIIHGKLDQECKRVGSGTWPLAEMRGLKM-QL-PLADVLADWCNAWEAVLNS 702
+I E +YA I+ GKLDQ KR P A R L+ QL + L++W N E +L S
Sbjct: 131 LINECMYAGIVRGKLDQ-LKRCFE--VPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLIS 187
Query: 703 V 705
+
Sbjct: 188 I 188
>At1g02090.1 68414.m00131 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 260
Score = 113 bits (272), Expect = 1e-25
Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 3/181 (1%)
Frame = +1
Query: 172 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 351
++Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA
Sbjct: 11 IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 352 YGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 531
+GT+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED
Sbjct: 71 HGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF 130
Query: 532 II-EAIYADIIHGKLDQECKRVGSGTWPLAEMRGLKM-QL-PLADVLADWCNAWEAVLNS 702
+I E +YA I+ GKLDQ KR P A R L+ QL + L++W N E +L S
Sbjct: 131 LINECMYAGIVRGKLDQ-LKRCFE--VPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLIS 187
Query: 703 V 705
+
Sbjct: 188 I 188
>At3g02200.2 68416.m00199 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Frame = +1
Query: 271 ELLEMPNIKELES-GPYATHLKTLNLFA---YGTYKDYIENKSDYLE---LTTVQC-KKL 426
+LL++P + +LE YA + L +F Y ++ S +L+ L+ C K+
Sbjct: 240 DLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKM 299
Query: 427 QHLTIATLATQEKC-IPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQ 579
+ L++ LA+ E IPY+ + + L + N +D+E I++AI A +I K+DQ
Sbjct: 300 RLLSLVDLASDESGKIPYTSIKDTLQV-NEQDVELWIVKAITAKLIECKMDQ 350
>At3g02200.1 68416.m00198 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 364
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Frame = +1
Query: 271 ELLEMPNIKELES-GPYATHLKTLNLFA---YGTYKDYIENKSDYLE---LTTVQC-KKL 426
+LL++P + +LE YA + L +F Y ++ S +L+ L+ C K+
Sbjct: 240 DLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKM 299
Query: 427 QHLTIATLATQEKC-IPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQ 579
+ L++ LA+ E IPY+ + + L + N +D+E I++AI A +I K+DQ
Sbjct: 300 RLLSLVDLASDESGKIPYTSIKDTLQV-NEQDVELWIVKAITAKLIECKMDQ 350
>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
putative (RPN9) similar to 26S proteasome subunit p40.5
[Homo sapiens] gi|3618343|dbj|BAA33214
Length = 386
Score = 40.7 bits (91), Expect = 0.001
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Frame = +1
Query: 190 LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKD 369
L++ K +L L ++ FGELL P +K L L F +G
Sbjct: 193 LSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQ 252
Query: 370 Y-----IENKSDYLELTTVQCKK--LQHLTIATLA-------TQEKCIPYSVLLEELDIK 507
Y + N S + V+ +K L+ + I L +++ IP SV+ E +
Sbjct: 253 YQELCRVHNASLSAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLSVIAERTKL- 311
Query: 508 NVRDLEDLIIEAIYADIIHGKLDQECKRVGSGTWPLAEMRGLKMQLPLADVLADWCNAWE 687
++ D+E L+++++ +I G LDQ V +W + G+ L D L W +
Sbjct: 312 SIEDVEHLLMKSLSVHLIEGILDQVNGTV-YVSWAQPRVLGIPQIKSLRDQLDSWVDKVH 370
Query: 688 AVLNSV 705
L SV
Sbjct: 371 TTLLSV 376
>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
putative (RPN9) contains similarity to 26S proteasome
subunit p40.5 GI:3618343 from [Homo sapiens]
Length = 386
Score = 39.5 bits (88), Expect = 0.002
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Frame = +1
Query: 190 LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKD 369
L++ K +L L ++ FGELL P +K L L F +G
Sbjct: 193 LSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQ 252
Query: 370 Y-----IENKSDYLELTTVQCKK--LQHLTIATLA-------TQEKCIPYSVLLEELDIK 507
Y + N S + V+ +K L+ + I L +++ IP S++ E +
Sbjct: 253 YQELCRVHNASLIAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLSIIAERTKL- 311
Query: 508 NVRDLEDLIIEAIYADIIHGKLDQECKRVGSGTWPLAEMRGLKMQLPLADVLADWCNAWE 687
++ D+E L+++++ +I G +DQ + +W + G+ L D L W +
Sbjct: 312 SIEDVEHLLMKSLSVHLIEGIIDQVNGTI-YVSWAQPRVLGIPQIKALRDQLDSWVDKVH 370
Query: 688 AVLNSV 705
L SV
Sbjct: 371 TTLLSV 376
>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 525
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 405 HSPVQEITASDH--CNTCNTREMYPLQCVT*GIGY*KC 512
H P+ I + CN CN RE+ L C+ G GY C
Sbjct: 401 HHPLYYIPQVEEKQCNGCNNREVRVLTCIESGCGYVLC 438
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 313 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 483
P L+ NLF+ K Y ++ +YL + + KK + +E+ IP V
Sbjct: 394 PSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEV 453
Query: 484 LLEELDIKN 510
L ELD KN
Sbjct: 454 L--ELDNKN 460
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 313 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 483
P L+ NLF+ K Y ++ +YL + + KK + +E+ IP V
Sbjct: 395 PSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEV 454
Query: 484 LLEELDIKN 510
L ELD KN
Sbjct: 455 L--ELDNKN 461
>At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
GI:1173638 [GB:U35779] from [Triticum aestivum] (Plant
Mol. Biol. 31 (5), 1009-1020 (1996)), GI:1813331 from
Vigna radiata
Length = 557
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 535 IEAIYADIIHG--KLDQECKRVGSGTWPLAEMRGL 633
+++IY +++ G +L EC R G + A+MRGL
Sbjct: 455 LQSIYTELVEGLKELGIECTRSNGGFYCWADMRGL 489
>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 428
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 139 SSLLSFSSNHPLEQFVL--LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESG 312
++++S + PLE+ L + +G +G+ ELI+++ G+ F + + NI L +
Sbjct: 141 AAMVSRTCIAPLERMKLEYIVRGEQGNLL-ELIQRIATNEGIRGFWKG-NLVNI--LRTA 196
Query: 313 PYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQ 414
P+ K++N +AY TY+ + S E T +
Sbjct: 197 PF----KSINFYAYDTYRGQLLKLSGNEETTNFE 226
>At5g62970.1 68418.m07901 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 328 LKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIK 507
L TL F + Y ++ K +L T +K + L IAT++ P L E+D+K
Sbjct: 380 LSTLQTFEWSGYPGSVQGK----DLATYILRKSRQLKIATISIGYGLDPQQKLKMEMDVK 435
>At4g02310.1 68417.m00312 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif;
Length = 349
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 684 PSIAPVGQDISQWKLHLQAAHLCQGPRP 601
P I VG+ S W L ++ L QGPRP
Sbjct: 112 PEIYFVGKSRSMWILDSRSGKLRQGPRP 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,516,714
Number of Sequences: 28952
Number of extensions: 316498
Number of successful extensions: 736
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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