Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0906
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.5  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   4.7  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   6.2  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 GYETLKRIFVAYCAPDRSEACQA 230
           G + LK++F+ YC P   E C++
Sbjct: 103 GIDVLKKLFLTYCIPYLLEKCES 125


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 433 ILENRGLTELEANSVESRYSGVLDGWIEDAPDDHHDEQTLDL 558
           I+   G+T+ +    ES+ + +++G+ ED  DD  +    D+
Sbjct: 407 IVSTNGITDGDTEMQESKKNVIINGFNEDDEDDEDEADFEDV 448


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 511 IEDAPDDHHDEQTLDLKHHEDDHLE 585
           ++ A    HD +TL L H++  H+E
Sbjct: 155 MDPAEHTRHDSKTLGLNHNQGAHIE 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,198
Number of Sequences: 5004
Number of extensions: 37039
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)