Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0906
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    28   4.8  

>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
            1342225-1342799,1343596-1343703,1345823-1346155,
            1346783-1349306
          Length = 1630

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 281  NVDEPRGTAAALGEGDVFLHSQHDHGTGGHW 373
            + D  RG     G      + +HDHG GG W
Sbjct: 987  SADTGRGRGRGRGRPGGRFNGRHDHGQGGRW 1017


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,049
Number of Sequences: 37544
Number of extensions: 249710
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)