Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0906
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_1698| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 517 DAPDDHHDEQTLDLKHHEDDH 579
           D  DD HD+   D  HH+DDH
Sbjct: 125 DDDDDDHDDDDHDDDHHDDDH 145



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 514 EDAPDDHHDEQTLDLKHHEDD 576
           +D  DDHHD+   D  HH+DD
Sbjct: 134 DDHDDDHHDD---DHDHHDDD 151


>SB_1698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 448 GLTELEANSVESRYSGVLDGWIEDAPDDHHDEQTLDLKHHEDDHLE 585
           GL + ++    S   G+ D ++ED  DD       DLK   DD L+
Sbjct: 97  GLPDFDSCKNNSYKEGISDEYVEDMKDDLFSVDVCDLKAILDDELK 142


>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = +1

Query: 517 DAPDDHHDEQTLDLK----HHEDDH 579
           D  DDHHDE   D K    H +DDH
Sbjct: 402 DDKDDHHDEDEHDEKKGDDHEDDDH 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,015
Number of Sequences: 59808
Number of extensions: 274584
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)