Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0906
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical ...    31   0.46 
Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.1 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 487 YSGVLDGWIEDAPDDHHDEQTLDLKHHEDD 576
           Y G  + W+    D HHDEQ  ++  H D+
Sbjct: 389 YPGFFEEWLPFLADAHHDEQQAEMWEHHDN 418


>Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical
           protein T11G6.4 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +1

Query: 355 WHGWSLVC*NNFLLSASSPCTLIGLIILENRGLTELEANSVESRYSGVLDGWIEDAPDDH 534
           W+GW+ V      + A +   +  ++I E R   +L+A   ++  +   D   +   D  
Sbjct: 422 WYGWNSVFYGFMAMMACTTICITPVLIKEKRKRHKLKAREDKALLNSDSDSNSDSEDDLL 481

Query: 535 HDEQTLDLKHH 567
            ++QT   KHH
Sbjct: 482 LNDQTTRRKHH 492


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 481 SRYSGVLDGWIEDAPDDHHDEQTLDLKHH 567
           ++  G++ GW +D PDD   +Q  +++ H
Sbjct: 228 AKLGGLVIGWADDEPDDEVRKQLSEVQEH 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,767,450
Number of Sequences: 27780
Number of extensions: 209329
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)