Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0906
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16020.1 68418.m01873 stress protein-related contains weak si...    28   5.3  
At4g13530.2 68417.m02110 expressed protein predicted protein, Ar...    27   7.0  
At4g13530.1 68417.m02109 expressed protein predicted protein, Ar...    27   7.0  

>At5g16020.1 68418.m01873 stress protein-related contains weak
           similarity to Swiss-Prot:P18899 stress protein (DNA
           damage-responsive protein 48) (DDRP 48) (YP 75)
           (Flocculent specific protein) [Saccharomyces cerevisiae]
          Length = 641

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 439 ENRGLTELEANSVESRYS-GVLDGWIEDAPDDHHDEQTLDLK 561
           EN  +T  +  S ES       D   +D  DD HDE  LD K
Sbjct: 566 ENESITIFQTPSDESSSEESYRDEHYDDVADDEHDEDDLDRK 607


>At4g13530.2 68417.m02110 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 269

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 436 LENR-GLTELEANSVESRYSGVLDGWIEDAPD 528
           LEN+ GL+ LEAN  +        GWIE + D
Sbjct: 44  LENQSGLSRLEANDEDGSVQSGSPGWIEPSSD 75


>At4g13530.1 68417.m02109 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 270

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 436 LENR-GLTELEANSVESRYSGVLDGWIEDAPD 528
           LEN+ GL+ LEAN  +        GWIE + D
Sbjct: 44  LENQSGLSRLEANDEDGSVQSGSPGWIEPSSD 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,119,185
Number of Sequences: 28952
Number of extensions: 197045
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)