Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0905
         (735 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FT1 Cluster: Putative RNA polymerase sigma factor rp...    36   1.4  
UniRef50_Q23BZ1 Cluster: Putative uncharacterized protein; n=2; ...    33   5.5  

>UniRef50_Q05FT1 Cluster: Putative RNA polymerase sigma factor rpoD;
           n=1; Candidatus Carsonella ruddii PV|Rep: Putative RNA
           polymerase sigma factor rpoD - Carsonella ruddii (strain
           PV)
          Length = 320

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
 Frame = +1

Query: 268 NTQYR*VVQ*FSYRAIK*RIKNFYFT*IYLTIRVLD*NKCNIIYEALHSINYLWSNKPL* 447
           N  Y+ +   F+    K + K F+   I  T  +   NK  I+ + L  + Y++  K   
Sbjct: 9   NKNYKNIKNIFNKFCFKKKKKKFFLK-IINTKNLF--NKITILRKIL--LKYIFRIKIFR 63

Query: 448 FYVRDGNKIKCLF*LKHSMDR*GLT*YENRSVRY--VPIYKLLTLKDKLFFSITKISN-- 615
           F+ +   KI C F   + + +  +   +   + +  + I K   LK K+FF+   I N  
Sbjct: 64  FFFK---KINCFFFFLNFIYKNTIFFKKRFKINFKILKIIKKNFLKKKIFFNCFSIFNNK 120

Query: 616 VEYVILKNDVLYYFVNLIIFLCHHLALSI*RKGMHIYK 729
           + Y + KN    YF+ ++IF+ + + +SI +K +  +K
Sbjct: 121 INYFLNKN----YFIKMLIFIIYKIKISIIKKNLIAFK 154


>UniRef50_Q23BZ1 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1162

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 574 LKDKLFFSITKISNVEYVILKNDVLYYFVNLIIFLC 681
           LK    F  +KI +   V+L ND ++ ++NL++F C
Sbjct: 670 LKGLNCFDFSKIPSAALVLLNNDTIFSYINLLLFRC 705


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,614,900
Number of Sequences: 1657284
Number of extensions: 11677736
Number of successful extensions: 22235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22233
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)