Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0905
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.6  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.8  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 550 VPIYKLLTLKDKLFFSITKISNVEYVILKNDVLYYFVNLIIFL 678
           V  Y L  L  K+ FS+     V+Y +L + V      L+IF+
Sbjct: 340 VQSYSLQLLHQKVQFSVLGFFVVDYTLLYSIVGAVTTYLVIFI 382


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 565 LLTLKDKLFFSITKISNVEYVILKNDVLYYFVNLIIFLCHHLALSI*R 708
           LL     L+ S   +   +Y I ++   YY  N  IFL  H  L I R
Sbjct: 127 LLLFDAYLWISSVGVRMFQYYIGRS-FTYYVCNTTIFLIFHSVLPIKR 173


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 609 NLGYRKKKFVFECKEFINRDV 547
           N+G  K +F+ +C E ++R +
Sbjct: 60  NVGINKWRFLLQCLEDLDRSL 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,491
Number of Sequences: 336
Number of extensions: 3576
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)