Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0905
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   3.7  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   6.4  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   8.5  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 90  DRVEKYFMHHG*SSNIMIFSLTSRYIE 10
           D V K+ M +G  +NI+I++  +RYIE
Sbjct: 74  DLVPKFLMANGDLTNILIYTDVTRYIE 100


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 536 APLGTSLFINSLHSKTN 586
           +P+ +SLF+NSLH K N
Sbjct: 453 SPIDSSLFLNSLHHKGN 469


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 361 IRVLD*NKCNIIYEALHSINYLWS 432
           + +LD  +CN++  AL S  YLWS
Sbjct: 253 LNLLDWGQCNMLAVALASRVYLWS 276


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 53  DYP*CIKYFSTRSFRDAIRYFWTIINVNEISIRGVNVSLDADRFD 187
           +YP    +FS   +  A+   +   NV +++  G +  L  DRFD
Sbjct: 201 EYPYVDGHFSLECYVKALDGAYANYNVRDVAKNGKSQGLGLDRFD 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,605
Number of Sequences: 5004
Number of extensions: 55648
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)