Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0905
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0370 - 19978462-19978800,19982435-19982591,19982683-199829...    29   3.8  
02_01_0498 - 3614621-3614674,3614780-3617161                           28   6.7  
01_06_1021 - 33883594-33884583                                         28   8.8  

>06_03_0370 -
           19978462-19978800,19982435-19982591,19982683-19982917,
           19983029-19983239,19985597-19985700,19985871-19985957,
           19986225-19986354
          Length = 420

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 300 ESLNDLS--VLSIPKQSLRNSVTMTGCIVQPDKRILT-NTGSNRSASKLTFTPR 148
           E L+D    +  IP+   RN VT+ G  ++  +RIL      N+S  K  F PR
Sbjct: 127 ERLSDFENEIKFIPRLQHRNIVTLKGYCIEGKERILVYEYMQNKSLDKFIFGPR 180


>02_01_0498 - 3614621-3614674,3614780-3617161
          Length = 811

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = +2

Query: 74  YFSTRSFRDAIRYFWTIINVNEISIRGVNVSL-DADRFDPVL---VRMRLSGCTMHPVIV 241
           Y    S  DA+R F+ +   NE+S   +   L      D  L    RM  SG  + PV V
Sbjct: 186 YTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSV 245

Query: 242 TLFLRDCFGILNTDKS 289
           +  L  C     TD S
Sbjct: 246 SSVLGACAQACATDYS 261


>01_06_1021 - 33883594-33884583
          Length = 329

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -3

Query: 541 RSDSHITSNLIYPLSALVRINILFYSHPV 455
           R+ + +T+ L++PLSA V ++ LF +HP+
Sbjct: 29  RTFALLTAGLVFPLSAAVLVHSLF-THPI 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,516
Number of Sequences: 37544
Number of extensions: 272899
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)