Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0905
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                29   5.2  
SB_45142| Best HMM Match : Herpes_IE68 (HMM E-Value=3.8)               29   5.2  
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)                   29   5.2  
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)                   29   5.2  
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)                   29   5.2  
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)                   28   6.8  

>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 287

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 140 ISIRGVNVSLDADRFDPVLVRMRLS---GCTMHP--VIVTLFLRDCFGILNTDKSFSDSH 304
           +S  G N SLD DRF   ++++R +    C + P  +I    LRD    +N  + FS+ H
Sbjct: 1   MSNTGPNGSLDNDRFLRAMLQLRNTPDRDCDLSPAQIIFGRPLRDSLMFVNRLEKFSNPH 60

Query: 305 I 307
           I
Sbjct: 61  I 61


>SB_45142| Best HMM Match : Herpes_IE68 (HMM E-Value=3.8)
          Length = 292

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 140 ISIRGVNVSLDADRFDPVLVRMRLS---GCTMHP--VIVTLFLRDCFGILNTDKSFSDSH 304
           +S  G N SLD DRF   ++++R +    C + P  +I    LRD    +N  + FS+ H
Sbjct: 52  MSNTGPNGSLDNDRFLRAMLQLRNTPDRDCDLSPAQIIFGRPLRDSLMFVNRLEKFSNPH 111

Query: 305 I 307
           I
Sbjct: 112 I 112


>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 1485

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 140  ISIRGVNVSLDADRFDPVLVRMRLS---GCTMHP--VIVTLFLRDCFGILNTDKSFSDSH 304
            +S  G N SLD DRF   ++++R +    C + P  +I    LRD    +N  + FS+ H
Sbjct: 1386 MSNTGPNGSLDNDRFLRAMLQLRNTPDRDCDLSPAQIIFGRPLRDSLMFVNRLEKFSNPH 1445

Query: 305  I 307
            I
Sbjct: 1446 I 1446


>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
          Length = 1213

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 140  ISIRGVNVSLDADRFDPVLVRMRLS---GCTMHP--VIVTLFLRDCFGILNTDKSFSDSH 304
            +S  G N SLD DRF   ++++R +    C + P  +I    LRD    +N  + FS+ H
Sbjct: 927  MSNTGPNGSLDNDRFLRAMLQLRNTPDRDCDLSPAQIIFGRPLRDSLMFVNRLEKFSNPH 986

Query: 305  I 307
            I
Sbjct: 987  I 987


>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1269

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 140  ISIRGVNVSLDADRFDPVLVRMRLS---GCTMHP--VIVTLFLRDCFGILNTDKSFSDSH 304
            +S  G N SLD DRF   ++++R +    C + P  +I    LRD    +N  + FS+ H
Sbjct: 983  MSNTGPNGSLDNDRFLRAMLQLRNTPDRDCDLSPAQIIFGRPLRDSLMFVNRLEKFSNPH 1042

Query: 305  I 307
            I
Sbjct: 1043 I 1043


>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
          Length = 707

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 140 ISIRGVNVSLDADRFDPVLVRMRLS---GCTMHP--VIVTLFLRDCFGILNTDKSFSDSH 304
           +S  G N SLD DRF   ++++R +    C + P  +I    LRD    +N  + FS+ H
Sbjct: 587 MSNTGPNGSLDNDRFLRAMLQLRNTPDRDCDLSPAQIIFGRPLRDSLMFVNRLEKFSNPH 646

Query: 305 I 307
           I
Sbjct: 647 I 647


>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 140 ISIRGVNVSLDADRFDPVLVRMRLS---GCTMHP--VIVTLFLRDCFGILNTDKSFSDSH 304
           +S  G N SLD DRF   ++++R +    C + P  +I    LRD    +N  + FS+ H
Sbjct: 412 MSNTGPNGSLDNDRFLRAMLQLRNTPDRDCDLSPAQIIFGRPLRDSLMFVNRLEKFSNPH 471

Query: 305 I 307
           I
Sbjct: 472 I 472


>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
          Length = 717

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 RFDPVLVRMRLSGCTMHPVIVTLFLRDC 262
           R  P+L ++ LSG T+ P +  L  ++C
Sbjct: 375 RMSPLLYKLNLSGLTLSPRVFRLLAKEC 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,320,594
Number of Sequences: 59808
Number of extensions: 349694
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)