Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0905
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 625 VILKNDVLYYFVNLII 672
           VI++   LYYF NLI+
Sbjct: 225 VIIRRRTLYYFFNLIV 240


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 622 YVILKNDVLYYFVNLII 672
           Y+I++   L+Y VNLI+
Sbjct: 226 YIIIRRKTLFYTVNLIL 242


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 460 DGNKIKCLF*LKHSMDR*GLT*YENRSVRYVPIYKLLTLKDKLF 591
           +G + K  F L  SMD      YE      +P+Y  +TL DK+F
Sbjct: 614 EGMRYKMFFFLS-SMDESNTKSYE------IPLYGKMTLDDKVF 650


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 23  DVSEKIIILLDYP*CIKYFSTRSFRDAIRY 112
           D+ E   + LD+P    Y+ T  FR+ + +
Sbjct: 277 DMGEVSYVSLDHPIPTGYYPTMRFRNGLAF 306


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 460 DGNKIKCLF*LKHSMDR*GLT*YENRSVRYVPIYKLLTLKDKLF 591
           +G + K  F L  SMD      YE      +P+Y  +TL DK+F
Sbjct: 614 EGMRYKMFFFLS-SMDESNTKSYE------IPLYGKMTLDDKVF 650


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 23  DVSEKIIILLDYP*CIKYFSTRSFRDAIRY 112
           D+ E   + LD+P    Y+ T  FR+ + +
Sbjct: 277 DMGEVSYVSLDHPIPTGYYPTMRFRNGLAF 306


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 151 TNTDFVYINNGPKISNSVPK 92
           TNT   ++    K+ NS+PK
Sbjct: 268 TNTILTFMTLASKVENSLPK 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,140
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)