Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0905
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    29   3.2  
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r...    29   3.2  
At3g10200.1 68416.m01221 dehydration-responsive protein-related ...    28   5.6  
At2g45670.1 68415.m05678 calcineurin B subunit-related contains ...    27   9.8  

>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 224 MHPVIVTLFLRDCFGILNTDKSFSDSHIAQ*NDE*KTSILPKFI 355
           +HP +  L L DC   +   KS SD  + Q  D  K+ +  K +
Sbjct: 608 LHPTLDFLDLEDCLNFIREHKSLSDDKVLQAIDLLKSVVTQKVL 651


>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 224 MHPVIVTLFLRDCFGILNTDKSFSDSHIAQ*NDE*KTSILPKFI 355
           +HP +  L L DC   +   KS SD  + Q  D  K+ +  K +
Sbjct: 616 LHPTLDFLDLEDCLNFIREHKSLSDDKVLQAIDLLKSVVTQKVL 659


>At3g10200.1 68416.m01221 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 591

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  FRDAIRYFWTIINVNEISIRGV 157
           +R+ + ++W ++NVNE  +R V
Sbjct: 422 WREQVNHYWRLMNVNETEVRNV 443


>At2g45670.1 68415.m05678 calcineurin B subunit-related contains
           Pfam PF00036: EF hand domain and Prosite PS00018:
           EF-hand calcium-binding domain; contains Pfam profile
           PF01553: Acyltransferase; weak similarity to Calcineurin
           B subunit isoform 2 (Protein phosphatase 2B regulatory
           subunit 2) (Protein phosphatase 3 regulatory subunit B
           alpha isoform 2) (Swiss-Prot:Q63811) [Mus musculus]
          Length = 539

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 74  YFSTRSFRDAIRYFWTIINVNEISIRGVNVSLDADRFDPVLVRMRLSGCTMHPVIVTLFL 253
           Y + +   +A++   TI N+N+  IRG+   LD D+   +     LS    +P+++ +F 
Sbjct: 476 YITIQELGEALKN--TIPNLNKDEIRGMYHLLDDDQDQRISQNDLLSCLRRNPLLIAIFA 533

Query: 254 RD 259
            D
Sbjct: 534 PD 535


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,097
Number of Sequences: 28952
Number of extensions: 251750
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)