Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0904
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    24   0.40 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   0.40 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   0.40 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   1.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   2.8  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 24.2 bits (50), Expect = 0.40
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 216 IFGELFDLPCFLVGETF-DPLESSLEEH 136
           +F +LF+L  FL+  ++  PL +S+  H
Sbjct: 183 VFVDLFNLSTFLIPRSYIPPLSTSMRSH 210


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 0.40
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 216 IFGELFDLPCFLVGETF-DPLESSLEEH 136
           +F +LF+L  FL+  ++  PL +S+  H
Sbjct: 343 VFVDLFNLSTFLIPRSYIPPLSTSMRSH 370


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 0.40
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 216 IFGELFDLPCFLVGETF-DPLESSLEEH 136
           +F +LF+L  FL+  ++  PL +S+  H
Sbjct: 343 VFVDLFNLSTFLIPRSYIPPLSTSMRSH 370


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 262 EALSDIHKCVWCGGRRESAA 321
           E    I KC+WCG    S A
Sbjct: 473 EQTRQILKCMWCGQSFRSLA 492



 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 262 EALSDIHKCVWC 297
           E   ++ KCVWC
Sbjct: 372 EQAKNVLKCVWC 383


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 3   AGPARCQSAAPQGSLRVSAEIGSALTATEHSGAR 104
           AGP +   A    S   +A+ G    A EHS  R
Sbjct: 115 AGPEKGGGAGAAASGSAAAQAGQPDNAIEHSDYR 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,535
Number of Sequences: 336
Number of extensions: 1289
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)