Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0904
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 27 1.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 2.6
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 2.6
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 25 3.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.4
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 3.4
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 25 3.4
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 25 3.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 4.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 24 6.0
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 1.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 21 QSAAPQGSLRVS-AEIGSALTATEHSGARDI-RLPRARHGRVPPASSQEGQRSRRQGNME 194
Q P+ S R +E+ L++ S A D+ RLPR G PP + QR R +++
Sbjct: 257 QEILPRSSRRARPSELVCPLSSLRISVAEDVNRLPRIDRGFDPPLTVSSTQRISRPPSLQ 316
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 292 TRTCEYPTAPPSRTSLIDEAV 230
+ + + P PPS TSLID A+
Sbjct: 769 SNSAKLPYVPPSLTSLIDNAI 789
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 2.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 66 GSALTATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQGNME 194
G + +++ G ++ LP +RH PP+S QR R+ + E
Sbjct: 123 GRHMAFSKNDGT-NLSLPPSRHQSPPPSSVLASQRHHRRHDSE 164
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 3.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 121 VHGMVVFLQRALKR-VKGLADK--ETWKIEEFTEYGAITKLPHLLETYVKEALSDIH 282
VH +V F K V LA K + WK+++ E GAI K+ L Y E + D++
Sbjct: 90 VHRLVKFKPTKSKYPVVVLAMKGIDQWKLDQLQEDGAIVKVVDPL--YAHEVVDDVN 144
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 3.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 24 SAAPQGSLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQ 158
SA+P S G+A A EHSG+ P +P + S+
Sbjct: 425 SASPFESGPAVGAAGAAAEAAEHSGSGSDSYPEGPLATIPESDSE 469
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 3.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -2
Query: 251 VSNR*GSLVMAPYSV-----NSSIFHVSLSARPLTLLRARW 144
VSNR + + +S+ NSS HVSL+ RP+ R W
Sbjct: 1496 VSNRRQRIAVDCFSILLDDYNSSYEHVSLTIRPILQSRLCW 1536
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 3.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 10 RLVANLRHLREAYESLLKLDLPSQPLSI---VERVIYDY 117
+L L ++ E++ SLL ++LP +P I VER + Y
Sbjct: 138 QLTLKLINIGESFHSLLPINLPYEPYVIANYVERQLRSY 176
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 178 DKETWKIEEFTEYGAITKLP 237
D E +I +FTEYG +T +P
Sbjct: 5 DPELNEILDFTEYGPLTPIP 24
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 236 GSLVMAPYSVNSSIFHVSLSARP 168
G V+AP SVN + HV S +P
Sbjct: 1051 GRDVVAPTSVNHDVSHVGESTKP 1073
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 58 LKLDLPSQPLSIVERVIYDYRVHGMVVFLQ 147
+ L+ P P +E +RVHG ++L+
Sbjct: 318 VSLESPMSPSLPIEGTFRSFRVHGATLYLE 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,005
Number of Sequences: 5004
Number of extensions: 20852
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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