Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0904
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0054 + 4612464-4612823 33 0.065
01_05_0674 - 24187820-24188713,24188809-24189204 32 0.15
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 31 0.20
10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134 28 1.8
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202... 28 1.8
09_02_0561 + 10681056-10682285,10682546-10682764 28 2.4
05_05_0137 - 22641577-22642119 27 3.2
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 27 3.2
05_02_0160 - 7194699-7195019,7195207-7195368,7195806-7195953,719... 27 4.2
01_01_0109 + 795842-796065,796086-796302,796480-796533 27 4.2
10_06_0187 - 11598240-11599508 27 5.6
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 27 5.6
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 26 7.4
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 26 7.4
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 26 7.4
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 26 7.4
03_05_0600 + 26021863-26022469,26022562-26022992 26 7.4
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 26 9.8
07_03_1750 - 29207692-29208225 26 9.8
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 26 9.8
03_02_0891 - 12204998-12205057,12205166-12205254,12205447-122058... 26 9.8
02_03_0059 + 14539028-14539100,14539488-14539834 26 9.8
>10_02_0054 + 4612464-4612823
Length = 119
Score = 33.1 bits (72), Expect = 0.065
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +3
Query: 24 SAAPQGSLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQE---GQRSRRQGNME 194
S A Q L V + + T + G R +RLP R SS Q RRQ E
Sbjct: 12 STAAQCVLVVGGILLARATVRQEHGQRPLRLPSGSGRRQLRLSSNVPAGNQLRRRQLRRE 71
Query: 195 DRRVHRIWSH 224
DR H +W H
Sbjct: 72 DRARHYVWGH 81
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 31.9 bits (69), Expect = 0.15
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 9 PARCQSAAPQGSLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQGN 188
PA Q A P A+I + AT+H A ++R A R+ +EG+ GN
Sbjct: 163 PAADQFAPPPAPSHQWAKIKRSRHATDHDAAGEVRRVEANSKRIRAMEEEEGELLVGYGN 222
Query: 189 ME 194
+E
Sbjct: 223 VE 224
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 31.5 bits (68), Expect = 0.20
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 15 RCQSAAPQGSLRVSAEIGSALTATEHSGARDIRLPRARHG-RVPPASSQEG 164
RC P G + E+ +L + H+ D+ P A HG P S EG
Sbjct: 177 RCHGECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEG 227
>10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134
Length = 368
Score = 28.3 bits (60), Expect = 1.8
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +3
Query: 3 AGPARCQSAAPQGSLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQ 182
AG ARC + SA G AL G R R PRARHG+ P + +RR
Sbjct: 197 AGTARCGDVGK----KPSALAGDALYWALDDGRR--RHPRARHGQGDPRRGR-AAAARRS 249
Query: 183 GNM 191
G++
Sbjct: 250 GSL 252
>03_06_0026 -
31118997-31119113,31119700-31119900,31120032-31120218,
31120339-31120415,31120738-31120815,31120858-31120974,
31121047-31121175,31121327-31121479,31121589-31122044,
31122122-31122239,31122385-31122575,31123140-31123415,
31123524-31123700,31124040-31124141,31124227-31124459,
31125563-31125764
Length = 937
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 142 LQRALKRVKGLADKETWKIEEFT-EYGAITKLPHLLETY 255
L R L VKGL+ E W I E T Y T LP LE +
Sbjct: 373 LMRILIDVKGLSWNEAWSITERTVAYTNHTVLPEALEKW 411
>09_02_0561 + 10681056-10682285,10682546-10682764
Length = 482
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 236 GSLVMAPYSVNSSIFHVSLSARPLTLLRARWRNTTMP 126
GS+V+AP + +F V L + + W TTMP
Sbjct: 382 GSVVLAPVEGMTWMFSVDLETMEIAECKEDWAATTMP 418
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 42 SLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQRS 173
++ I A A H G +R R R GR+PPA G S
Sbjct: 19 AMATRGRIPHAALAISHRGKSCVRA-RGRRGRIPPAPLTAGHES 61
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 145 QRALKRVKGLADKETWKIEEFTEYGAITKLPHLLETYVKEALSDIHK 285
Q L++++ DK W+ +F + ++P + TY + +++D+ K
Sbjct: 362 QTLLEKLQVDKDKFVWQERQFNLKVDLAEIPERVSTYCESSIADLKK 408
>05_02_0160 -
7194699-7195019,7195207-7195368,7195806-7195953,
7196286-7196362,7196717-7196787,7196891-7196977,
7197662-7198201,7198430-7198439
Length = 471
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 117 PRARHGRVPPASSQEGQRSRRQGNMEDRR 203
P + +G++P ASS EGQ+++ + +R
Sbjct: 429 PTSEYGQIPSASSSEGQQTQEVESRTTKR 457
>01_01_0109 + 795842-796065,796086-796302,796480-796533
Length = 164
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 93 SGARDIRLPRARHGRVPPASSQEGQRSRRQGNMED 197
SG + R A HG V A + +G R RRQ ED
Sbjct: 117 SGGSERRSAVAGHGDVTEADAAQGHRPRRQRVGED 151
>10_06_0187 - 11598240-11599508
Length = 422
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 142 LQRALKRVKGLADKETWKIEEFTEYGAITKLPHLLETYVKEALSDIH 282
L++ LK+ +GL +KE+ + ++ Y +I P L + V A IH
Sbjct: 155 LEKKLKQ-RGLLNKESEESDDEDNYFSIELTPSLFTSAVDNAYQSIH 200
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 26.6 bits (56), Expect = 5.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 300 AAPHALVNIRQRLLHVRL**MRQFSDGSIFGELFDLPCFLVGE 172
A HAL+N L++ M+ +DGSI G P +L GE
Sbjct: 167 AVHHALINQSGVLVNTLSNMMKSIADGSIAGHQAAGPVYLQGE 209
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 158 RGSKVSPTRKHGRSKSSPNMEP 223
R ++ T K GR KSS NM+P
Sbjct: 52 RSERLEVTAKEGRPKSSLNMQP 73
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 26.2 bits (55), Expect = 7.4
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = +3
Query: 12 ARCQSAAPQGSLRVSAEIGSALTATEHSG-ARDIRLPRARHGRVPPASSQEGQRSRRQGN 188
A+ +AA + + S ++ G D + R PPASS + R
Sbjct: 911 AKNTAAAADARSKAKGSVFSRISFPGGDGNPSDAKRSRRSSSDKPPASSSSSSKKARAAV 970
Query: 189 MEDRRVHRIWSHH*TASSIRDVREGGAVG 275
ED HH A++ + R A G
Sbjct: 971 AEDNDGRHHRRHHREAAAAAEERRRPAAG 999
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 26.2 bits (55), Expect = 7.4
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +1
Query: 55 LLKLDLPSQPLSIVERVIYDYRVHGMVVFL-----QRALKRVKGLADKETWKIEEFTEYG 219
LL D+ S+PLS ERV + G+ V + R R+ GL + T ++ + G
Sbjct: 363 LLNTDIRSRPLSDAERVKIKKALRGVKVGVTHRGNMRRKYRISGLTSQATRELTFPVDQG 422
Query: 220 AITK--LPHLLETY 255
K + + ETY
Sbjct: 423 GTVKSVVQYFQETY 436
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 232 LPHLLETYVKEA-LSDIHKCVWC 297
+PHLL TYVK+ +SD V+C
Sbjct: 1249 MPHLLYTYVKKLHISDCPNLVFC 1271
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 26.2 bits (55), Expect = 7.4
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 TATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQGNMEDRRVHRIWSHH*T-ASSIRDV 254
TA SG+ + + R PP S + RQG+ E ++HH SS D
Sbjct: 205 TANCSSGSPERKRRRPSLDNEPPGGSTPPATTGRQGHQEHDDDDDEYAHHGADESSDDDG 264
Query: 255 REGGAVG 275
GGA+G
Sbjct: 265 GLGGAIG 271
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 25.8 bits (54), Expect = 9.8
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Frame = +3
Query: 36 QGSLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQ---RSRRQGNMEDRRV 206
+G + ++A G H G R G+ P S+ R RR G+
Sbjct: 39 EGPIAIAAGHGRGHRGGGHGGPASPRHHLRGRGQAGPNSADHAASRGRGRRSGDATSASS 98
Query: 207 HRIWSHH*TASSIRDVREGGAVGYSQ 284
H ++RDVR GG V Q
Sbjct: 99 RHGGGH--ADHAVRDVRRGGNVSTQQ 122
>07_03_1750 - 29207692-29208225
Length = 177
Score = 25.8 bits (54), Expect = 9.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 108 IRLPRARHGRVPPASSQEGQRSRRQGNMEDRRVHRIWSHH*TASSIR 248
+RL RA GR PASS+E + + + R WS AS R
Sbjct: 42 LRLVRAASGRPSPASSREVRHAADRALAVAARGRSRWSRAILASRAR 88
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 33 PQGSLRVSAEIGSALTATEHSGARDIR-LPRARHGRVPPASS 155
P G+++ S+ +A +HSG LP RH P +SS
Sbjct: 223 PAGNVQASSSSAAARPPEQHSGNNTAAGLPACRHRPSPSSSS 264
>03_02_0891 -
12204998-12205057,12205166-12205254,12205447-12205861,
12206087-12206381,12206508-12206755,12207430-12207636
Length = 437
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 151 ALKRVKGLADKETWKIEEFTEYGAITKLPHLLETYVK 261
+L RV+G + W + Y TK H+LET K
Sbjct: 383 SLTRVQGKMSMDKWFMSTSYGYVVSTKRQHILETLKK 419
>02_03_0059 + 14539028-14539100,14539488-14539834
Length = 139
Score = 25.8 bits (54), Expect = 9.8
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 75 LTATEHSGARDIRLPR----ARHGRVPPASSQEGQRSRRQGNMEDRRVHRIWS 221
LTATE GA + R+P RH PP Q ++ + VH++ S
Sbjct: 75 LTATEKEGAAESRIPPPMKVKRHLTPPPIVRAADQFQEQEMKSPEPSVHKLAS 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,079,678
Number of Sequences: 37544
Number of extensions: 178656
Number of successful extensions: 802
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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