Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0904
(354 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5718| Best HMM Match : CXC (HMM E-Value=0.59) 46 1e-05
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32) 29 1.1
SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_27566| Best HMM Match : 7tm_1 (HMM E-Value=0.00016) 28 2.5
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18) 26 7.7
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
>SB_5718| Best HMM Match : CXC (HMM E-Value=0.59)
Length = 492
Score = 45.6 bits (103), Expect = 1e-05
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = +1
Query: 25 LRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKIEE 204
+R++ + SL +L LPS L V ++ D R + A+ +K L E W E
Sbjct: 49 VRNVSACHSSLAQLQLPSAALDSVRSLVGDLRFLCTTEVFKEAIAEIKTLHCNELWNHEN 108
Query: 205 FTEYGAITKLPHLLETYVKEAL 270
G IT LP L E V E L
Sbjct: 109 DINIGRITSLPLLFENIVMETL 130
>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 31.1 bits (67), Expect = 0.27
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 24 SAAPQGSLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQG 185
S+AP+G+ ++ + + +G D A HG PA S GQ+S R+G
Sbjct: 440 SSAPKGTSEKPRQLKDRKDSEQKTGCPDSDDVLAPHGSDNPAVSNSGQKSARKG 493
>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
Length = 943
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 21 QSAAPQG--SLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQGNME 194
+ P+G + R + ++T +EH R R+PRA G + A + R++R+G+ +
Sbjct: 348 EDEGPEGLTNSRQGGKRQKSVTFSEHKNIR--RIPRASRGSITQARGPDFARNQRRGSGQ 405
Query: 195 DR 200
R
Sbjct: 406 GR 407
>SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 202 EFTEYGAITKLPHLLETYVKEALSDIHKCVWCGGRRESAAL 324
EF + G + LPHLL ++ D+H+ GR + L
Sbjct: 393 EFADRGCVIHLPHLLNKKTRKEWRDLHEMDTLYGRGDKEEL 433
>SB_27566| Best HMM Match : 7tm_1 (HMM E-Value=0.00016)
Length = 628
Score = 27.9 bits (59), Expect = 2.5
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 52 SLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKI--EEFTEYGAI 225
+L K++L P + + R+IY Y V V F++ A + L TWK ++ +Y
Sbjct: 427 NLYKVNLGDAP-TFIYRMIYYYMVGDYVTFIRCAFAALYILLGMLTWKSLKDQTKKYDGE 485
Query: 226 TKLP--HLLETYVKEALSDIHKCVWCG 300
LP L+ +++H V G
Sbjct: 486 LSLPEQQRLKLQKSRRQTEVHAAVTVG 512
>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 1 ARARLVANLRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVK 168
A+A+L + ++EA +S +K D PS + +VE +V +LQ A K+ +
Sbjct: 937 AKAQLQEGM--IKEAIDSYIKADDPSTYMEVVEAANSAGNFEDLVRYLQMARKKAR 990
>SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 115 YRVHGMVVFLQRALKRVKGLADKETWKIEEFTEYGAITKLP 237
YR HG V LQ +RVK W I+++T + +P
Sbjct: 27 YRRHG-TVSLQEMTRRVKSETKGMEWSIQKYTLHNTTDAIP 66
>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1580
Score = 26.6 bits (56), Expect = 5.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 99 ARDIRLPRARHGRVPPASSQEGQRSRRQGNMEDRRVHRIW--SHH*TASSIRDVREG 263
A DI + + R+PP + Q G R +Q + R +W S AS +R +R G
Sbjct: 849 ALDICVKTQVNSRLPPQAPQPGTRPVQQSDSPSHRWTNVWRLSLAVMASMLRTLRFG 905
>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
Length = 1311
Score = 26.2 bits (55), Expect = 7.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 17 LPICGTSGKPTSLC*NWICP 76
+P+ G SG+P C W+ P
Sbjct: 321 IPLVGVSGRPIPKCPRWLVP 340
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 99 ARDIRLPRARHGRVPPASSQEGQRSRRQGNMEDRRVHR 212
+R +RL RH + Q+ ++Q ++EDRR+ R
Sbjct: 734 SRSVRL-ETRHEHCDENGTSHSQKCKQQASIEDRRLAR 770
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,780,693
Number of Sequences: 59808
Number of extensions: 181117
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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